[BiO BB] Parameter -e blastpgp/PSI-BLAST

[Martin Heusel]

On 5/2/06, Martin Gollery <marty.gollery at gmail.com> wrote:
> -e sets the threshold expectation value for alignments in the final output.
> -h is the threshold for inclusion into the PSSM. I believe the default
> setting for -e is 10, which is extremely lenient.

Hi Marty,

is it correct then that -e doesn't affect a PSSM at the end of some iterations?

regards

Martin