[BiO BB] Domain Sequences

Karthik Raman karthik at rishi.serc.iisc.ernet.in
Fri Nov 10 01:11:44 EST 2006


I was just wondering if it is possible to download the domain details
for individual proteins of an organism.

It would be useful to have the domain details either in terms of the
accession number and the span (start and end letters in the sequence)
or better still as faa files giving individual domain sequence. Is it
possible to retrieve this from databases such as Pfam or InterPro?

Any pointers?


   Graduate Research Student
   Supercomputer Education and Research Centre/Bioinformatics Centre
   Indian Institute of Science, Bangalore

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