[BiO BB] Smith-Waterman on FPGA

Deepan Chakravarthy codeshepherd at gmail.com
Mon Oct 16 12:56:19 EDT 2006

 I am curious to know if anyone has programmed Smith-Waterman algorithm
into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
currently playing with FPGA and any of the sequence alignment
algorithms please share your experience. 
Deepan Chakravarthy N

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