[BiO BB] Smith-Waterman on FPGA

[Martin Gollery]

Quite a few people have done this, Deepan. It is much easier than BLAST!
Compugen, TimeLogic, Progeniq, CLCbiosystems, Adaptive Genomics, Mitrion,
and several academic groups have ported it.

Cheers,
Marty

On 10/16/06, Deepan Chakravarthy <codeshepherd at gmail.com> wrote:
>
> Hello,
> I am curious to know if anyone has programmed Smith-Waterman algorithm
> into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
> currently playing with FPGA and any of the sequence alignment
> algorithms please share your experience.
> Thanks
> Deepan Chakravarthy N
> http://www.codeshepherd.com
>
> _______________________________________________
> General Forum at Bioinformatics.Org -
> BiO_Bulletin_Board at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bio_bulletin_board
>



-- 
-- 
Martin Gollery
Associate Director
Center For Bioinformatics
University of Nevada at Reno
Dept. of Biochemistry / MS330
775-784-7042
-----------
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.bioinformatics.org/pipermail/bbb/attachments/20061017/411582ed/attachment.html>