[BiO BB] Smith-Waterman on FPGA
pfern at igc.gulbenkian.pt
Tue Oct 17 08:57:58 EDT 2006
I haven't tried, but I guess that http://www.clccube.com/flexible.html has it
ready for testing, in a box wuth USB connection.
Quoting Deepan Chakravarthy <codeshepherd at gmail.com>:
> I am curious to know if anyone has programmed Smith-Waterman algorithm
> into FPGA. I guess FPGA is being used to run BLAST. Anyone who is
> currently playing with FPGA and any of the sequence alignment
> algorithms please share your experience.
> Deepan Chakravarthy N
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