[BiO BB] Error messages when running blastpgp (NCBI PSI-BLAST)

[Iddo Friedberg]

Osnat Dafni wrote:

need more info.. how did you formatdb your database?

Iddo

> Hi,
>
> I'm trying to run the local version of ncbi psi-blast (blastpgp) using a
> self-generated database and a fasta query file. I get the following error
> messages repeatedly while the program runs:
>
> [NULL_Caption] ERROR: ncbiapi [000.000]  BioseqFindFunc: couldn't uncache
> [NULL_Caption] ERROR: ncbiapi [000.000]  ObjMgrNextAvailEntityID failed with idx
> 2048
>
> I'm using the following command line:
>
> blastpgp -d db_file -i query_file -e 1.0 -m 8 -o output_file -I T -a 2 -j 4 -h
> 0.001
>
> While experimenting I've noticed that when replacing the option "-m 8" (tabular
> output format) with "-m 0" (default output format), the errors go away.
>
> Does any one has any information about what could be causing these errors?
> Thanks in advance.
>
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-- 

Iddo Friedberg, Ph.D.
Burnham Institute for Medical Research
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