[BiO BB] blast graphical result & gapped alignment

Sowmiya Raj sowmiya_raj at rediffmail.com
Wed Dec 5 00:08:04 EST 2007


hi all,
I am developing a webserver using the standalone BLAST program. I am getting the results. I want to include the graphical results in the text result page(html). How do i go about it? Should i use any GD modules from PERL? And also, i am able to get only the ungapped results, but not the gapped results. though i have included the command  -g T -G 13 -E 3. Please let me know how to do gapped alignment.


On Tue, 04 Dec 2007 sysadmins at bioinformatics.org wrote :
>Somya, we have a mailing list that is better for that question:
>  bbb at bioinformatics.org
>  http://bioinformatics.org/lists/bbb
>But please elaborate: what do you mean by "include the graphical results"?
>How do i include the graphical results of blast in image format while building a web server using stand alone blast program?

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