[BiO BB] Web-based BLAST Services
Wilfred Li
wilfred at sdsc.edu
Tue Dec 4 16:54:54 EST 2007
The URL is http://camera.calit2.net. :)
Regards,
Wilfred
-----Original Message-----
From: bio_bulletin-bounces at restools.sdsc.edu
[mailto:bio_bulletin-
bounces at restools.sdsc.edu] On Behalf Of Kravitz, Saul
Sent: Tuesday, December 04, 2007 10:31 AM
To: bbb at bioinformatics.org
Subject: [BiO BB] Web-based BLAST Services
We have developed a web-based implementation of BLAST as part of
the
CAMERA project (http://calit2.camera.net). Although we realize
that
there are a number of parallel implementations of BLAST, I am
interested in the capabilities of web-based deployments of
BLAST.
Specifically, there capacities as measured in terms of:
- Maximum number of query sequences
- Maximum total size of the query sequences
- Maximum number or data volume of hits returned (NCBI seems
to be
500)
- Maximum Total Search Time (NCBI is 1 Hr)
In CAMERA's case, the numbers today are:
- Maximum number of query sequences -- we've tested to 250k
- Maximum total size of the query sequences -- we've tested
to 100Mbp
- Maximum number or data volume of hits returned (we've
tested to
several hundred thousand)
- Maximum Total Search Time (None so far)
Regards,
Saul Kravitz
J. Craig Venter Institute
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