[BiO BB] how to identify the function and structure of a novel sequence
yqzhou at buffalo.edu
Mon Feb 5 11:46:06 EST 2007
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On Feb 2, 2007, at 5:04 PM, Li Xue wrote:
> hello all,
> I have a novel sequence(the protein sequence, DNA sequence, the
> coding sequence, and the cDNA sequence).
> I tried BLASTn, BLASTx, and PSI-BLAST with default parameters and
> modified parameters which loosed the restriction to try to find
> distantly related matches. What I got are only unknown sequences
> and hypothetical sequences.
> I also tried EBI Interpro with default parameters. No hits.
> Can someone offer some ways to identify the function and the
> structure of a new sequence? Thank you.
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