[BiO BB] Phylogenetic Distance calculation

[soorya kiran]

*Hai Shameer,*
**
*Thank you for the interest you have shown.*
*We took the same path quoted by you with  slight changes. As the sequence
was DNA we used DnaDist. We used Phylodraw for tree construction. *
**
*I am curious on whether we can get any clue about the year from the branch
length of the tree. *
*Please comment.*
**
*Thanks for the article. Its really nice.*
**
*cheers*
**
*Srijith
*
On 2/15/07, Shameer Khadar <skhadar at gmail.com> wrote:
>
> Have a look at this article :
> Baldauf SL: *Phylogeny for the faint of heart: a tutorial.*
> *Trends Genet* 2003, *19**:*345-351.
> Cheers,
> --
> Shameer
> On 2/15/07, Shameer Khadar <skhadar at gmail.com> wrote:
> >
> > Srijith,
> > Can you tell me how you created your Phylogram ?
> > Is it using the standard Phylogeny protocol MSA -> SEQBOOT (Value) ->
> > ProtDist -> Neighbor - Consensus -> Phylogram / Dendrogram ? If that was
> the
> > case, you will get a picture of evolution based on bootstrap support ,
> but
> > not in terms of year.
> >
> > PS: I am sorry that your question is not clear to me (may be I didnt get
> > what you are looking for :| ).
> >
> > Cheers,
> > Shameer
> > NCBS - TIFR
> >
> >
> > On 2/14/07, soorya kiran <kiran.soorya at gmail.com> wrote:
> > >
> > > Good day all,
> > >
> > > Can anyone tell how can I find evolutionary distance (Year) from a
> given
> > > set
> > > of amino acid sequences, provided we have constructed the phylogram ?
> > >
> > >
> > > Thanks in advance.
> > >
> > > Srijith
> > > _______________________________________________
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> > >
> >
> >
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