[BiO BB] Protein Datatypes for function prediction

[Iddo Friedberg]

Shameless plug: read my review:


*Friedberg I.* *Automated Function Prediction: the Genomic Challenge*
*Briefings
in Bioinformatics* (2006) *7*(3):225-242

There is a "tunnel through" link on my page to BiB:

http://iddo-friedberg.org/papers.html

The second link after the citation takes you to the paper, in case your
institute does not subscribe.

best,

Iddo

On 7/23/07, Ajit <a.gopee at utm.intnet.mu> wrote:
>
>
>
> Subject: Protein function prediction based using different datatypes
>
>
> Hello
> Can anyone tell me what are the currently available data types for protein
> function prediction and their associated tools/web site links?
>
> I already have a small list but I want to make sure I cover all of
> them...aznd I want to get some preliminaries on each of these...
>
> (1) Amino acid sequences
> (2) Protein structure
>
> (3) Genome sequences
>
> (4) Phylogenetic data
>
> (5) Microarray expression data
>
> (6) Protein interaction networks and protein complexes
>
> (7) Biomedical literature
>
> (8) Gene Ontology
>
>
>
> Please do send some details on actually on how each of the above can be
> used in protein function prediction...
>
>
>
> Thanks a lot
>
>
>
> Rgds
>
>
>
> Ajit
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-- 

I. Friedberg

"The only problem with troubleshooting is that
sometimes trouble shoots back."