[BiO BB] Consensus Sequence Plots

[Sipos Botond]

Hello!

I think sequence logos may be useful for this problem.
http://weblogo.berkeley.edu/

Botond.



On 6/6/07, Daniel Harari <lcharari at yahoo.com > wrote:
>
> Dear all,
>
> I am in need of a program that will have the capacity to scan large files
> of multiple sequence protein alignments ( e.g 2500 sequences of a protein
> 500 amino acids in length), in the search regions of consensus
> sequences.  The input alignment file will be in clustal or Muscle
> format.     I am looking for either a graphical or tabular output,  where if
> possible, it would be able to home in on regions of interest and analyze
> them more thoroughly.
>
> Any recommendations would be very much appreciated.
>
> Regards,
>
> Daniel
>
>
> Daniel Harari, PhD.
> Chaim Orbach 15A.
> Rehovot, 76534
> ISRAEL
> Email:     daniel.harari at yahoo.com
> Phone:   +972-8-931-5943
> Mobile:   +972-544-241-168
>
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