[BiO BB] A Bioperl module for dbEST report format

[yvan.strahm at gmail.com]

Hello,

Does someone knows if Bioperl has a module to read the report format
from dbEST (ftp://ftp.ncbi.nih.gov/repository/dbEST/)?
Or one should write its own?

here is an entry:

IDENTIFIERS

dbEST Id:       5
EST name:       EST00006
GenBank Acc:    M61958
GenBank gi:     272208
GDB Dsegment:   D0S2525E

CLONE INFO
Clone Id:       HHCSB86
Source:         ATCC
Id in host:     77063
DNA type:       cDNA

PRIMERS
Sequencing:     M13 Forward
PolyA Tail:     Unknown

SEQUENCE
                TGCACAACCAAGTTTTGTGACTACGGGAAGGCTCCCGGGGCAGAGGAGTACGCTCAACAA
                GATGTGTTAAAGAAATCTTACTCCAAGGCCTTCACGCTGACCATCTCTGCCCTCTTTGTG
                ACACCCAAGACGACTGGGGCCCNGGTGGAGTTAAGCGAGCAGCAACTNCAGTTGTNGCCG
                AGTGATGTGGACAAGCTGTCACCCACTGACA

Entry Created:  May 26 1992
Last Updated:   May 26 1992

PUTATIVE ID     Assigned by submitter
                2',3'-cyclic nucleotide phoshodiesterase

LIBRARY
dbEST lib id:   4
Lib Name:       Hippocampus, Stratagene (cat. #936205)
Organism:       Homo sapiens
Vector:         lambdaZAP-II
Description:    Female, 2 years; oligo-dT + random primed cDNA synthesis;
                lambdaZAP-II vector, 1.0kb average insert size.

SUBMITTER
Name:           Kerlavage, AR
Lab:            Bioinformatics
Institution:    The Institute for Genomic Research
Address:        9712 Medical Center Drive, Rockville, MD 20850 USA
Tel:            3018699056
Fax:            3018699423
E-mail:         arkerlav at tigr.org

CITATIONS
PubMed ID:      2047873
Title:          Complementary DNA sequencing: expressed sequence tags and
                human genome project
Authors:        Adams,M.D., Kelley,J.M., Gocayne,J.D., Dubnick,M.,
                Polymeropoulos,M.H., Xiao,H., Merril,C.R., Wu,A., Olde,B.,
                Moreno,R.F., etal
Citation:       Science 252: 1651-1656 1991

PubMed ID:      8401586
Title:          Chromosomal distribution of 320 genes from a brain cDNA
                library
Authors:        Polymeropoulos,M.H., Xiao,H., Sikela,J.M., Adams,M.,
                Venter,J.C., Merrill,C.R.
Citation:       Nat. Genet. 4: 381-386 1993


MAP DATA
Map:            17
Method:         Somatic Cell Hybridization: Polymeropoulos
Citation:       Polymeropoulos,M.H. 1993
Submitter:      Mihael H. Polymeropoulos


MAP SUBMITTERS
Name:           Mihael H. Polymeropoulos
Lab:            Division of Intramural Research
Institution:    National Center for Human Genome Research
Address:        Bldg. 49, Room 4A-66, NIH, 8600 Rockville Pike, Bethesda, MD
                20894
Tel:            301 402 2119
E-mail:         mihael at helix.nih.gov


MAP METHODS
Method Name:    Somatic Cell Hybridization: Polymeropoulos


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