[BiO BB] PGEToolbox -- Matlab toolbox for population genetics & evolution

James Cai jamesjjcai at gmail.com
Sat Jun 23 01:37:33 EDT 2007

Dear All,

PGEToolbox is a Matlab-based program for analysis of polymorphism and
divergence data in population genetics and evolution. It computes basic
statistics of DNA sequence variation and carries out neutrality tests, such
as Tajima's D test, Fu & Li's tests and Fay & Wu's H test. The significance
of tests is determined from the distribution of the statistics obtained by
coalescent simulation. The toolbox performs McDonald-Kreitman test (and
several extensions), and also contains functions for handling SNP genotype
and haplotype data. The latest version of the program can be obtained from:


All the best,

James J. Cai

More information about the BBB mailing list