[BiO BB] How to download Protein complexes from PDB ?
skhadar at gmail.com
Thu Sep 13 09:50:07 EDT 2007
I havent use efetch before. Anyway I will look in to that.
Separately RCSB is providing WebServices and its clients in Java and Perl, I
think here you will get a programmatic access to the database. But due to
some strange security reasons my sysadmin people are not allowing me to
access the webservices.
http://www.rcsb.org/robohelp/webservices/summary.htm -> Exact URL
I hope this will help.
On 9/13/07, Mike Marchywka <marchywka at hotmail.com> wrote:
> >You can download whole PDB from RCSB. Goto
> >Click on Download, you can go with FTP download to download the full pdb.
> >seperate dirs are avaialable. you can write a wget based script to get
> >full download.
> Thanks but that is essentially what I have now using the NCBI tools but I
> don't think
> they have a search API. All I was after was a way to avoid returning the
> list of hits
> or having to reformat it for serial file transfer requests. The other
> usually have some option that just returns all the results with just
> one request ( I think it is efectch but I'd have to look).
> Can you find the hidden words? Take a break and play Seekadoo!
> General Forum at Bioinformatics.Org -
> BiO_Bulletin_Board at bioinformatics.org
More information about the BBB