[BiO BB] How to make a network graphic using my genes in pathways?

[Chen, Jake]

Dear Jinyan,

We have a software tool called "ProteoLens" (http://bio.informatics.iupui.edu/proteolens/) that is quite robust, especially if you are familiar with SQL and would like to use Oracle , postgreSQL, or GML to manage your network data.

For a simple network with prettier layout and click-style navigator, try Cytoscape.

Best,

Jake Chen, Ph.D.
Assistant Professor, (IU) Informatics & (Purdue) Computer Science
Director, Indiana Center for Systems Biology and Personalized Medicine
Indiana University - Purdue University Indianapolis
719 Indiana Avenue, WK #190
Indianapolis, IN 46202
Office: (317) 278-7604
Lab: (317) 274-7542
jakechen at iupui.edu | http://bio.informatics.iupui.edu/

-----Original Message-----
From: bbb-bounces at bioinformatics.org [mailto:bbb-bounces at bioinformatics.org] On Behalf Of Jinyan Huang
Sent: Tuesday, April 01, 2008 10:05 PM
To: bbb at bioinformatics.org
Subject: [BiO BB] How to make a network graphic using my genes in pathways?

I have 20 pathways. My interesting genes are in these pathways. There
are some genes overlaps in these pathways. How can I make a graphic
network using these genes? It means connecting these pathways through
these overlap genes. What kind of software can I use?

Thank you very much in advance.


--
Best regards,
Jinyan Huang (ekeen)
School of Life Sciences and Technology, 1302 Room
Tongji University
Siping Road 1239, Shanghai 200092
P.R. China
Tel :0086-21-65981041
Msn: hiekeen at hotmail.com
eMail: hiekeen at gmail.com

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