[BiO BB] How to make a network graphic using my genes in pathways?
timothydoconnor at gmail.com
Thu Apr 3 03:02:01 EDT 2008
I recommend cytoscape: http://www.cytoscape.org/.
I haven't done it yet but it seems to be set up to run analyses as
well. The pictures come out pretty good as well.
On Wed, Apr 2, 2008 at 4:49 PM, Gaurav Pandey <pandey.gaurav at gmail.com> wrote:
> You can try GraphViz (http://www.graphviz.org/).
> On Tue, Apr 1, 2008 at 9:04 PM, Jinyan Huang <hiekeen at gmail.com> wrote:
> > I have 20 pathways. My interesting genes are in these pathways. There
> > are some genes overlaps in these pathways. How can I make a graphic
> > network using these genes? It means connecting these pathways through
> > these overlap genes. What kind of software can I use?
> > Thank you very much in advance.
> > --
> > Best regards,
> > Jinyan Huang (ekeen)
> > School of Life Sciences and Technology, 1302 Room
> > Tongji University
> > Siping Road 1239, Shanghai 200092
> > P.R. China
> > Tel :0086-21-65981041
> > Msn: hiekeen at hotmail.com
> > eMail: hiekeen at gmail.com
> > _______________________________________________
> > BBB mailing list
> > BBB at bioinformatics.org
> > http://www.bioinformatics.org/mailman/listinfo/bbb
> Gaurav Pandey Email: gaurav at cs.umn.edu
> Computer Science Department Webpage: www.cs.umn.edu/~gaurav
> University of Minnesota Tel: 612-701-2494
> BBB mailing list
> BBB at bioinformatics.org
More information about the BBB