[BiO BB] tissue specificity
ryan at raaum.org
Mon Feb 25 20:19:10 EST 2008
Have you looked at the Novartis SymAtlas?
The published reference is http://www.pnas.org/cgi/content/abstract/012025199v1
On Mon, Feb 25, 2008 at 3:54 PM, Samantha Fox <bioinfosm at gmail.com> wrote:
> I appreciate your response. Well, my objective is to look at expression
> data, with respect to tissue specificity. I needed specific help in this
> case, as I am not able to find any help or tools/software to deal with
> tissue specificity information.
> I came across this tool GeneMerge (http://genemerge.bioteam.net/), and
> tissuedb from HUSAR group (
> http://genome.dkfz-heidelberg.de/menu/tissue_db/index.html) ... but have not
> yet conquered them.
> Anyone with experience on these or similar tools, do point me to FAQs or
> other details, when using a group of genes to determine tissue specificity
> of the group.
> On Mon, Feb 25, 2008 at 2:39 PM, Mike Marchywka <marchywka at hotmail.com>
> > Normally when I post to this list I try to provide some background as I
> > have no idea where
> > everyone else is interest-wise. I vaguely remember running into something
> > related while
> > researching some other topic and went back to do a quick literature
> > search. I'm not sure
> > of your immediate problem or state of knowledge but, from what I can find,
> > this is generally an open
> > area. For example, you could try reading stuff like this,
> > http://www.ncbi.nlm.nih.gov/pubmed/18194723?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum
> > Clin Lab Med. 2008 Mar;28(1):127-43. Links
> > Data mining for biomarker development: a review of tissue specificity
> > analysis.Klee EW.
> > Division of Experimental Pathology, Department of Laboratory Medicine and
> > Pathology, Mayo Clinic, 200 1st Street SW, Stabile 2-50, Rochester, MN
> > 55905, USA
> > I was surprised to find many genes labelled, "tissue specific"
> > http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&term="tissue%20specific"
> > and maybe you could look into some of the related publications.
> > Do you have a specific thesis, problem, or objective?
> > Mike Marchywka
> > 586 Saint James Walk
> > Marietta GA 30067-7165
> > 404-788-1216 (C)<- leave message
> > 989-348-4796 (P)<- emergency only
> > marchywka at hotmail.com
> > Note: Hotmail is blocking my mom's entire
> > ISP claiming it is to reduce spam but probably
> > to force users to use hotmail. Please DON'T
> > assume I am ignoring you and try
> > me on marchywka at yahoo.com if no reply
> > here. Thanks.
> > > Date: Mon, 25 Feb 2008 12:26:28 -0600
> > > From: bioinfosm at gmail.com
> > > To: bio_bulletin_board at bioinformatics.org
> > > Subject: [BiO BB] tissue specificity
> > >
> > > Hi all.
> > >
> > > Are there any tools, or prediction software for tissue specificity;
> > given a
> > > set of genes... what tissue they are most likely to be, or given a set
> > of
> > > expression data and tissues.. integrate it all to determing tissue
> > specific
> > > genes!
> > >
> > > Thanks ..
> > >
> > > ~S
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