[BiO BB] tissue specificity
bioinfosm at gmail.com
Mon Feb 25 15:54:53 EST 2008
I appreciate your response. Well, my objective is to look at expression
data, with respect to tissue specificity. I needed specific help in this
case, as I am not able to find any help or tools/software to deal with
tissue specificity information.
I came across this tool GeneMerge (http://genemerge.bioteam.net/), and
tissuedb from HUSAR group (
http://genome.dkfz-heidelberg.de/menu/tissue_db/index.html) ... but have not
yet conquered them.
Anyone with experience on these or similar tools, do point me to FAQs or
other details, when using a group of genes to determine tissue specificity
of the group.
On Mon, Feb 25, 2008 at 2:39 PM, Mike Marchywka <marchywka at hotmail.com>
> Normally when I post to this list I try to provide some background as I
> have no idea where
> everyone else is interest-wise. I vaguely remember running into something
> related while
> researching some other topic and went back to do a quick literature
> search. I'm not sure
> of your immediate problem or state of knowledge but, from what I can find,
> this is generally an open
> area. For example, you could try reading stuff like this,
> Clin Lab Med. 2008 Mar;28(1):127-43. Links
> Data mining for biomarker development: a review of tissue specificity
> analysis.Klee EW.
> Division of Experimental Pathology, Department of Laboratory Medicine and
> Pathology, Mayo Clinic, 200 1st Street SW, Stabile 2-50, Rochester, MN
> 55905, USA
> I was surprised to find many genes labelled, "tissue specific"
> and maybe you could look into some of the related publications.
> Do you have a specific thesis, problem, or objective?
> Mike Marchywka
> 586 Saint James Walk
> Marietta GA 30067-7165
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> me on marchywka at yahoo.com if no reply
> here. Thanks.
> > Date: Mon, 25 Feb 2008 12:26:28 -0600
> > From: bioinfosm at gmail.com
> > To: bio_bulletin_board at bioinformatics.org
> > Subject: [BiO BB] tissue specificity
> > Hi all.
> > Are there any tools, or prediction software for tissue specificity;
> given a
> > set of genes... what tissue they are most likely to be, or given a set
> > expression data and tissues.. integrate it all to determing tissue
> > genes!
> > Thanks ..
> > ~S
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