[BiO BB] Newbie question.[Scanned]

[drjohn08318 at yahoo.com]

Why not just do the experiment?
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-----Original Message-----
From: "Lambert, Lisa" <Lambert at Chatham.edu>

Date: Sun, 6 Jan 2008 19:55:33 
To:General Forum at Bioinformatics.Org <bbb at bioinformatics.org>
Subject: Re: [BiO BB] Newbie question.[Scanned]


I haven't tested the procedure myself, but a paper in 2006 in BMC Bioinformatics described a "machine learning approach." See Yan et al. 7:262. Good luck!

	-----Original Message----- 
	From: bbb-bounces at bioinformatics.org on behalf of Donnie Darko 
	Sent: Sun 1/6/2008 9:57 AM 
	To: bbb at bioinformatics.org 
	Cc: 
	Subject: [BiO BB] Newbie question.[Scanned]
	
	

	Hi folks,
	
	Suppose I have a novel gene whose product is a DNA binding protein, how
	would I go about locating potential binding sites where this protein could
	bind? I'm only interested in finding sites for this specific protein and not
	a general scan of tfbs.
	
	I've extracted upstream sequences of genes that I'm interested in but I
	can't think of a way forward.
	
	Cheers and belated happy new year :-P
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