[BiO BB] size of cavity

Mike Marchywka marchywka at hotmail.com
Mon Jul 20 17:34:51 EDT 2009









----------------------------------------
> Date: Thu, 16 Jul 2009 23:33:54 -0700
> From: ngadewal at yahoo.com
> To: bbb at bioinformatics.org
> Subject: [BiO BB] size of cavity
>
> Dear all,
>
> I am looking for the online tool or program to calculate the volume of the cavity in a given protein structure.
>

I don't know about online but if you can't find what you need and can
play with a glut demo program, I've used this for outlining cavities, 

http://www.spottext.com/marchywka/glutp/docs_surfaces.html

shouldn't be hard to find volume.  Also try a search on wikipedia.org, 
they have some good "list of molecular related software" pages.

> Thanks & regards,
>
> NIKHIL S. GADEWAL
> ACTREC,
> Tata Memorial Centre,
> Kharghar,
> Navi Mumbai,
> India
>
>
>
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> http://www.bioinformatics.org/mailman/listinfo/bbb

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