[BiO BB] size of cavity

[Dan Bolser]

You could try asking on PDB-L


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Dan.

2009/7/20 Mike Marchywka <marchywka at hotmail.com>:
>
> ----------------------------------------
>> Date: Thu, 16 Jul 2009 23:33:54 -0700
>> From: ngadewal at yahoo.com
>> To: bbb at bioinformatics.org
>> Subject: [BiO BB] size of cavity
>>
>> Dear all,
>>
>> I am looking for the online tool or program to calculate the volume of the cavity in a given protein structure.
>>
>
> I don't know about online but if you can't find what you need and can
> play with a glut demo program, I've used this for outlining cavities,
>
> http://www.spottext.com/marchywka/glutp/docs_surfaces.html
>
> shouldn't be hard to find volume.  Also try a search on wikipedia.org,
> they have some good "list of molecular related software" pages.
>
>> Thanks & regards,
>>
>> NIKHIL S. GADEWAL
>> ACTREC,
>> Tata Memorial Centre,
>> Kharghar,
>> Navi Mumbai,
>> India