[BiO BB] size of cavity

[P.P.Karthi keyan]

Hi !
U may try the

QSITE FINDER - http://www.modelling.leeds.ac.uk/pocketfinder/
CASTP -http://sts-fw.bioengr.uic.edu/castp/calculation.php

This help in predicting the active site cavity area...

Thanking you,

regards,
P.P.Karthikeyan.
------------------
P.P.Karthikeyan,
http://ppkarthikeyan.googlepages.com/
http://iscbsc.org/rsg/rsg-india/




2009/7/21 Dan Bolser <dan.bolser at gmail.com>

> You could try asking on PDB-L
>
>
> I keep a list of mailing lists here:
>
> http://biodatabase.org/index.php/List_of_mailing_lists_for_biologists
>
>
> Dan.
>
> 2009/7/20 Mike Marchywka <marchywka at hotmail.com>:
> >
> > ----------------------------------------
> >> Date: Thu, 16 Jul 2009 23:33:54 -0700
> >> From: ngadewal at yahoo.com
> >> To: bbb at bioinformatics.org
> >> Subject: [BiO BB] size of cavity
> >>
> >> Dear all,
> >>
> >> I am looking for the online tool or program to calculate the volume of
> the cavity in a given protein structure.
> >>
> >
> > I don't know about online but if you can't find what you need and can
> > play with a glut demo program, I've used this for outlining cavities,
> >
> > http://www.spottext.com/marchywka/glutp/docs_surfaces.html
> >
> > shouldn't be hard to find volume.  Also try a search on wikipedia.org,
> > they have some good "list of molecular related software" pages.
> >
> >> Thanks & regards,
> >>
> >> NIKHIL S. GADEWAL
> >> ACTREC,
> >> Tata Memorial Centre,
> >> Kharghar,
> >> Navi Mumbai,
> >> India
>
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