[BiO BB] Pipeline Tool

Javier Forment Millet jforment at ibmcp.upv.es
Wed Oct 7 03:28:06 EDT 2009


We developed an open-source EST analysis tool for our respective EST projects
which runs automatically from the chromatogram files to the population of a
database with a web graphical front-end and strong capabilities of data mining.
See the paper (BMC Bioinformatics 2008, 9:5) at

You can freely download it from http://bioinf.comav.upv.es/est2uni/

We are using from 2005 and there is a user's community which continues improving
the tool from a distribution list

Hope it helps,


Quoting Daniel Xavier de Sousa <danielucg at yahoo.com.br>:

> Hi Everybody,
> I'm looking for a tool for run Genome Project. In other words, I want a
> system web to submit chromatogram, and process on it bases calling (PHRED),
> vector cleaning  (CROSS_MATCH), clustering (CAP3) and annotation (BLAST) -
> PIPELINE. And I would like to see all data on graphic interface.
> I have tried many others tools, as ESTWeb. But all them have different
> problems: the project has finished, there is not support, there is no lab
> using,...
> I have searched Google, Bioinformatics.ORG, ... But,I`m asking here because I
> would like to get some one that there are labs using it.
> No matter if the tool is comercial (have to pay for it). I really want
> resolve my problem of pipeline process.
> Can anyone, suggest one?
> Thanks,
> -Daniel Xavier de Sousa
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Javier Forment Millet
Instituto de Biología Celular y Molecular de Plantas (IBMCP) CSIC-UPV
 Ciudad Politécnica de la Innovación (CPI) Edificio 8 E, Escalera 7 Puerta E
 Calle Ing. Fausto Elio s/n. 46022 Valencia, Spain
Tlf.:+34-96-3877858 (ext. 77858)
FAX: +34-96-3877859
jforment at ibmcp.upv.es

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