[BiO BB] Fwd: [CD-HIT] Fwd: CD-HIT Support Request
Dan Bolser
dan.bolser at gmail.com
Tue Apr 6 03:48:46 EDT 2010
---------- Forwarded message ----------
From: Limin Fu <phoolimin at gmail.com>
Date: 5 April 2010 19:24
Subject: Re: [CD-HIT] Fwd: [BiO BB] CD-HIT Support Request
To: Dan Bolser <dan.bolser at gmail.com>
Cc: cd-hit-l at bioinformatics.org
Hi,
The warnings from perl scripts are harmless. The critical errors are
results of improper command line arguments. cd_hit_2d.exe is supposed
to work on two sequence datasets of fasta format, to cluster one
dataset against the other. In this error report, *.clstr files are
used as input files, which contain no sequence data, that's the cause
of the errors.
Regards,
Limin
On Sun, Apr 4, 2010 at 3:20 PM, Dan Bolser <dan.bolser at gmail.com> wrote:
>
> ---------- Forwarded message ----------
> From: Silas Labedo <silaslabedo at gmail.com>
> Date: 12 March 2010 07:10
> Subject: [BiO BB] CD-HIT Support Request
> To: bbb at bioinformatics.org, biodevelopers at bioinformatics.org
> Cc: Edwin Mulwa <emulwa at integratedanalysisinc.com>, Patrick Njuguna
> Njogu <pnjuguna at i-a-inc.com>, "gsaxena at integratedanalysisinc.com"
> <gsaxena at integratedanalysisinc.com>
>
>
> Hi Everyone,
>
> I am writing a clustering program in java that calls cd-hit for New,
> Incremental, and Hierarchical clustering. The program works fine for
> New clustering, however when I attempt to call cd-hit from within the
> java code for Incremental clustering, I get errors. The error logs are
> attached below. 3 different errors occured that I don't understand and
> are the reason for which I am seeking your assistance.
>
> This error occurred when trying to execute cd-hit for hierarchical
> clustering from the linux command prompt.
> ****************************************************************************************
> [root at ip-10-194-215-223 cd-hit]# ./psi-cd-hit-local.pl -i
> hierarchical93 -o hierarchical90 -c 0.90
> Name "main::formatdb_no" used only once: possible typo at
> ./psi-cd-hit-local.pl line 1712.
> Name "main::known_singles" used only once: possible typo at
> ./psi-cd-hit-local.pl line 1873.
> Name "main::longest_ide" used only once: possible typo at
> ./psi-cd-hit-local.pl line 966.
> Name "main::known_single" used only once: possible typo at
> ./psi-cd-hit-local.pl line 1873.
> [root at ip-10-194-215-223 cd-hit]#
>
>
> [root at ip-10-194-215-223 cd-hit]# perl psi-cd-hit.pl -i hierarchical93
> -o hierarchical90 -c 0.3
> Name "main::reformat_seg" used only once: possible typo at
> psi-cd-hit.pl line 65.
> Name "main::restart_seg" used only once: possible typo at psi-cd-hit.pl line 62.
> Can't exec "formatdb": No such file or directory at
> .//psi-cd-hit-local.pl line 1723.
> Can not formatdb at .//psi-cd-hit-local.pl line 1724.
> [root at ip-10-194-215-223 cd-hit]# vi hierarchical90.log
> [root at ip-10-194-215-223 cd-hit]# vi hierarchical90.out
> [root at ip-10-194-215-223 cd-hit]#
>
>
> The following outputs and subsequent errors occurred during
> incremental clustering executed from within a java code.
> ****************************************************************************************
> Cluster CMD: C:\cd-hit-windows\cd_hit_2d.exe -i "C:/cluster
> files/unipath_2010-3-9.clstr" -i2 "c:/cluster
> files/unipath_2010-3-9.fasta" -o "C:/cluster files/unipath_2010-3-9"
> -c 0.9 -n 5 -d 50
>
> Mar 9, 2010 6:55:31 AM Here is the standard output of the command:
>
> total seq in db1: 0
> total seq in db2: 15732
> longest and shortest : 0 and 99999999
> Total letters: 0
> Mar 9, 2010 6:55:57 AM Process Exit Value : 1
> Mar 9, 2010 6:55:57 AM Here is the standard error of the command (if any):
>
>
> Fatal Error
> Memory
>
> Program halted !!
>
> **************************************************************************************
> Cluster CMD: C:\cd-hit-windows\cd_hit_2d.exe -i "C:/cluster
> files/clusteroutput.clstr" -i2 "c:/cluster files/aric_2010-3-10.fasta"
> -o "C:/cluster files/aric_2010-3-10" -c 0.9 -n 5 -d 50
>
> Mar 10, 2010 6:51:01 AM Here is the standard output of the command:
>
> total seq in db1: 79
> total seq in db2: 4776
> longest and shortest : 48 and 11
> Total letters: 1061
> Sequences have been sorted
> longest and shortest : 34350 and 11
> Total letters: 3167574
> compute index table for first database
> Reading swap
> Comparing with SEG 0
> ..........1000 compared 0 clustered
> ..........2000 compared 0 clustered
> ..........3000 compared 0 clustered
> ..........4000 compared 0 clustered
> .......
> 4776 compared 0 clustered
> writing non-redundant sequences from db2
> writing clustering information
> program completed !
>
> Total CPU time 103
> Mar 10, 2010 6:51:23 AM Process Exit Value : 0
> Mar 10, 2010 6:51:23 AM Here is the standard error of the command (if any):
>
>
> The attached fasta file was generated along with the last part of the
> output/error log. The contents of the fasta file are very un-familiar
> and I would be very grateful if someone can help me understand it.
> Thanks you all.
> Regards.
>
> >Cluster 0
> 0 56aa, >Cluster 498... *
> >Cluster 1
> 0 49aa, >Cluster 6436... *
> >Cluster 2
> 0 40aa, >Cluster 1087... *
> >Cluster 3
> 0 40aa, >Cluster 7998... *
> >Cluster 4
> 0 39aa, >Cluster 6718... *
> >Cluster 5
> 0 38aa, >Cluster 1072... *
> >Cluster 6
> 0 35aa, >Cluster 14402... *
> >Cluster 7
> 0 34aa, >Cluster 8584... *
> >Cluster 8
> 0 29aa, >Cluster 1243... *
> >Cluster 9
> 0 29aa, >Cluster 3934... *
> >Cluster 10
> 0 27aa, >Cluster 1175... *
> >Cluster 11
> 0 26aa, >Cluster 2224... *
> >Cluster 12
> 0 26aa, >Cluster 2997... *
> >Cluster 13
> 0 26aa, >Cluster 13025... *
> >Cluster 14
> 0 25aa, >Cluster 70... *
> >Cluster 15
> 0 25aa, >Cluster 3729... *
> >Cluster 16
> 0 24aa, >Cluster 3642... *
> >Cluster 17
> 0 24aa, >Cluster 7403... *
> >Cluster 18
> 0 22aa, >Cluster 371... *
> >Cluster 19
> 0 22aa, >Cluster 942... *
> >Cluster 20
> 0 22aa, >Cluster 1057... *
> >Cluster 21
> 0 22aa, >Cluster 4995... *
> >Cluster 22
> 0 22aa, >Cluster 11970... *
> >Cluster 23
> 0 21aa, >Cluster 1454... *
> >Cluster 24
> 0 21aa, >Cluster 6057... *
> >Cluster 25
> 0 21aa, >Cluster 6809... *
> >Cluster 26
> 0 21aa, >Cluster 10858... *
> >Cluster 27
> 0 21aa, >Cluster 13091... *
> >Cluster 28
> 0 21aa, >Cluster 13503... *
> >Cluster 29
> 0 20aa, >Cluster 418... *
> >Cluster 30
> 0 20aa, >Cluster 918... *
> >Cluster 31
> 0 20aa, >Cluster 1299... *
> >Cluster 32
> 0 20aa, >Cluster 1436... *
> >Cluster 33
> 0 20aa, >Cluster 4225... *
> >Cluster 34
> 0 20aa, >Cluster 7553... *
> >Cluster 35
> 0 20aa, >Cluster 7894... *
> >Cluster 36
> 0 19aa, >Cluster 123... *
> >Cluster 37
> 0 19aa, >Cluster 529... *
> >Cluster 38
> 0 19aa, >Cluster 633... *
> >Cluster 39
> 0 19aa, >Cluster 861... *
> >Cluster 40
> 0 19aa, >Cluster 890... *
> >Cluster 41
> 0 19aa, >Cluster 1519... *
> >Cluster 42
> 0 19aa, >Cluster 2298... *
> >Cluster 43
> 0 19aa, >Cluster 8244... *
> >Cluster 44
> 0 19aa, >Cluster 8906... *
> >Cluster 45
> 0 18aa, >Cluster 2199... *
> >Cluster 46
> 0 18aa, >Cluster 2271... *
> >Cluster 47
> 0 18aa, >Cluster 5824... *
> >Cluster 48
> 0 18aa, >Cluster 5961... *
> >Cluster 49
> 0 18aa, >Cluster 6518... *
> >Cluster 50
> 0 18aa, >Cluster 7567... *
> >Cluster 51
> 0 18aa, >Cluster 10920... *
> >Cluster 52
> 0 18aa, >Cluster 11850... *
> >Cluster 53
> 0 18aa, >Cluster 12368... *
> >Cluster 54
> 0 17aa, >Cluster 279... *
> >Cluster 55
> 0 17aa, >Cluster 780... *
> >Cluster 56
> 0 17aa, >Cluster 3123... *
> >Cluster 57
> 0 17aa, >Cluster 4123... *
> >Cluster 58
> 0 17aa, >Cluster 9534... *
> >Cluster 59
> 0 17aa, >Cluster 9544... *
> >Cluster 60
> 0 17aa, >Cluster 11848... *
> >Cluster 61
> 0 16aa, >Cluster 319... *
> >Cluster 62
> 0 16aa, >Cluster 1228... *
> >Cluster 63
> 0 16aa, >Cluster 4469... *
> >Cluster 64
> 0 16aa, >Cluster 7761... *
> >Cluster 65
> 0 15aa, >Cluster 2470... *
> >Cluster 66
> 0 15aa, >Cluster 5485... *
> >Cluster 67
> 0 15aa, >Cluster 9036... *
> >Cluster 68
> 0 14aa, >Cluster 16... *
> >Cluster 69
> 0 14aa, >Cluster 198... *
> >Cluster 70
> 0 14aa, >Cluster 252... *
> >Cluster 71
> 0 14aa, >Cluster 292... *
> >Cluster 72
> 0 14aa, >Cluster 364... *
> >Cluster 73
> 0 14aa, >Cluster 657... *
> >Cluster 74
> 0 14aa, >Cluster 670... *
> >Cluster 75
> 0 14aa, >Cluster 770... *
> >Cluster 76
> 0 14aa, >Cluster 869... *
> >Cluster 77
> 0 14aa, >Cluster 900... *
> >Cluster 78
> 0 14aa, >Cluster 962... *
> >Cluster 79
> 0 14aa, >Cluster 1137... *
> >Cluster 80
> 0 14aa, >Cluster 1165... *
> >Cluster 81
> 0 14aa, >Cluster 1230... *
> >Cluster 82
> 0 14aa, >Cluster 1273... *
> >Cluster 83
> 0 14aa, >Cluster 1659... *
> >Cluster 84
> 0 14aa, >Cluster 2038... *
> >Cluster 85
> 0 14aa, >Cluster 2318... *
> >Cluster 86
> 0 14aa, >Cluster 2432... *
> >Cluster 87
> 0 14aa, >Cluster 2651... *
> >Cluster 88
> 0 14aa, >Cluster 2745... *
> >Cluster 89
> 0 14aa, >Cluster 2767... *
> >Cluster 90
> 0 14aa, >Cluster 2874... *
> >Cluster 91
> 0 14aa, >Cluster 2904... *
> >Cluster 92
> 0 14aa, >Cluster 3079... *
> >Cluster 93
> 0 14aa, >Cluster 3091... *
> >Cluster 94
> 0 14aa, >Cluster 3354... *
> >Cluster 95
> 0 14aa, >Cluster 3400... *
> >Cluster 96
> 0 14aa, >Cluster 3565... *
> >Cluster 97
> 0 14aa, >Cluster 3884... *
> >Cluster 98
> 0 14aa, >Cluster 3987... *
> >Cluster 99
> 0 14aa, >Cluster 4079... *
> >Cluster 100
> 0 14aa, >Cluster 4244... *
> >Cluster 101
> 0 14aa, >Cluster 4350... *
> >Cluster 102
> 0 14aa, >Cluster 4593... *
> >Cluster 103
> 0 14aa, >Cluster 4601... *
> >Cluster 104
> 0 14aa, >Cluster 4880... *
> >Cluster 105
> 0 14aa, >Cluster 5149... *
> >Cluster 106
> 0 14aa, >Cluster 5329... *
> >Cluster 107
> 0 14aa, >Cluster 5677... *
> >Cluster 108
> 0 14aa, >Cluster 5857... *
> >Cluster 109
> 0 14aa, >Cluster 6106... *
> >Cluster 110
> 0 14aa, >Cluster 6232... *
> >Cluster 111
> 0 14aa, >Cluster 6306... *
> >Cluster 112
> 0 14aa, >Cluster 6349... *
> >Cluster 113
> 0 14aa, >Cluster 6355... *
> >Cluster 114
> 0 14aa, >Cluster 6630... *
> >Cluster 115
> 0 14aa, >Cluster 6805... *
> >Cluster 116
> 0 14aa, >Cluster 9161... *
> >Cluster 117
> 0 14aa, >Cluster 9297... *
> >Cluster 118
> 0 14aa, >Cluster 9795... *
> >Cluster 119
> 0 14aa, >Cluster 9942... *
> >Cluster 120
> 0 14aa, >Cluster 10169... *
> >Cluster 121
> 0 14aa, >Cluster 10709... *
> >Cluster 122
> 0 14aa, >Cluster 10761... *
> >Cluster 123
> 0 14aa, >Cluster 11147... *
> >Cluster 124
> 0 14aa, >Cluster 11626... *
> >Cluster 125
> 0 14aa, >Cluster 11637... *
> >Cluster 126
> 0 14aa, >Cluster 13122... *
> >Cluster 127
> 0 14aa, >Cluster 13790... *
> >Cluster 128
> 0 14aa, >Cluster 14731... *
> >Cluster 129
> 0 13aa, >Cluster 2... *
> >Cluster 130
> 0 13aa, >Cluster 8... *
> >Cluster 131
> 0 13aa, >Cluster 100... *
> >Cluster 132
> 0 13aa, >Cluster 109... *
> >Cluster 133
> 0 13aa, >Cluster 121... *
> >Cluster 134
> 0 13aa, >Cluster 136... *
> >Cluster 135
> 0 13aa, >Cluster 167... *
> >Cluster 136
> 0 13aa, >Cluster 176... *
> >Cluster 137
> 0 13aa, >Cluster 196... *
> >Cluster 138
> 0 13aa, >Cluster 231... *
> >Cluster 139
> 0 13aa, >Cluster 232... *
> >Cluster 140
> 0 13aa, >Cluster 277... *
> >Cluster 141
> 0 13aa, >Cluster 310... *
> >Cluster 142
> 0 13aa, >Cluster 323... *
> >Cluster 143
> 0 13aa, >Cluster 347... *
> >Cluster 144
> 0 13aa, >Cluster 392... *
> >Cluster 145
> 0 13aa, >Cluster 420... *
> >Cluster 146
> 0 13aa, >Cluster 431... *
> >Cluster 147
> 0 13aa, >Cluster 460... *
> >Cluster 148
> 0 13aa, >Cluster 520... *
> >Cluster 149
> 0 13aa, >Cluster 573... *
> >Cluster 150
> 0 13aa, >Cluster 590... *
> >Cluster 151
> 0 13aa, >Cluster 594... *
> >Cluster 152
> 0 13aa, >Cluster 618... *
> >Cluster 153
> 0 13aa, >Cluster 688... *
> >Cluster 154
> 0 13aa, >Cluster 803... *
> >Cluster 155
> 0 13aa, >Cluster 805... *
> >Cluster 156
> 0 13aa, >Cluster 815... *
> >Cluster 157
> 0 13aa, >Cluster 832... *
> >Cluster 158
> 0 13aa, >Cluster 837... *
> >Cluster 159
> 0 13aa, >Cluster 913... *
> >Cluster 160
> 0 13aa, >Cluster 940... *
> >Cluster 161
> 0 13aa, >Cluster 945... *
> >Cluster 162
> 0 13aa, >Cluster 970... *
> >Cluster 163
> 0 13aa, >Cluster 1013... *
> >Cluster 164
> 0 13aa, >Cluster 1034... *
> >Cluster 165
> 0 13aa, >Cluster 1035... *
> >Cluster 166
> 0 13aa, >Cluster 1086... *
> >Cluster 167
> 0 13aa, >Cluster 1151... *
> >Cluster 168
> 0 13aa, >Cluster 1162... *
> >Cluster 169
> 0 13aa, >Cluster 1218... *
> >Cluster 170
> 0 13aa, >Cluster 1253... *
> >Cluster 171
> 0 13aa, >Cluster 1265... *
> >Cluster 172
> 0 13aa, >Cluster 1341... *
> >Cluster 173
> 0 13aa, >Cluster 1350... *
> >Cluster 174
> 0 13aa, >Cluster 1352... *
> >Cluster 175
> 0 13aa, >Cluster 1357... *
> >Cluster 176
> 0 13aa, >Cluster 1443... *
> >Cluster 177
> 0 13aa, >Cluster 1499... *
> >Cluster 178
> 0 13aa, >Cluster 1653... *
> >Cluster 179
> 0 13aa, >Cluster 1806... *
> >Cluster 180
> 0 13aa, >Cluster 1861... *
> >Cluster 181
> 0 13aa, >Cluster 1893... *
> >Cluster 182
> 0 13aa, >Cluster 1905... *
> >Cluster 183
> 0 13aa, >Cluster 1927... *
> >Cluster 184
> 0 13aa, >Cluster 1942... *
> >Cluster 185
> 0 13aa, >Cluster 2079... *
> >Cluster 186
> 0 13aa, >Cluster 2313... *
> >Cluster 187
> 0 13aa, >Cluster 2320... *
> >Cluster 188
> 0 13aa, >Cluster 2332... *
> >Cluster 189
> 0 13aa, >Cluster 2381... *
> >Cluster 190
> 0 13aa, >Cluster 2391... *
> >Cluster 191
> 0 13aa, >Cluster 2472... *
> >Cluster 192
> 0 13aa, >Cluster 2486... *
> >Cluster 193
> 0 13aa, >Cluster 2489... *
> >Cluster 194
> 0 13aa, >Cluster 2516... *
> >Cluster 195
> 0 13aa, >Cluster 2577... *
> >Cluster 196
> 0 13aa, >Cluster 2608... *
> >Cluster 197
> 0 13aa, >Cluster 2613... *
> >Cluster 198
> 0 13aa, >Cluster 2634... *
> >Cluster 199
> 0 13aa, >Cluster 2803... *
> >Cluster 200
> 0 13aa, >Cluster 2805... *
> >Cluster 201
> 0 13aa, >Cluster 2898... *
> >Cluster 202
> 0 13aa, >Cluster 2949... *
> >Cluster 203
> 0 13aa, >Cluster 2982... *
> >Cluster 204
> 0 13aa, >Cluster 2987... *
> >Cluster 205
> 0 13aa, >Cluster 3014... *
> >Cluster 206
> 0 13aa, >Cluster 3065... *
> >Cluster 207
> 0 13aa, >Cluster 3151... *
> >Cluster 208
> 0 13aa, >Cluster 3197... *
> >Cluster 209
> 0 13aa, >Cluster 3215... *
> >Cluster 210
> 0 13aa, >Cluster 3280... *
> >Cluster 211
> 0 13aa, >Cluster 3388... *
> >Cluster 212
> 0 13aa, >Cluster 3492... *
> >Cluster 213
> 0 13aa, >Cluster 3527... *
> >Cluster 214
> 0 13aa, >Cluster 3531... *
> >Cluster 215
> 0 13aa, >Cluster 3583... *
> >Cluster 216
> 0 13aa, >Cluster 3685... *
> >Cluster 217
> 0 13aa, >Cluster 3732... *
> >Cluster 218
> 0 13aa, >Cluster 3735... *
> >Cluster 219
> 0 13aa, >Cluster 3740... *
> >Cluster 220
> 0 13aa, >Cluster 3977... *
> >Cluster 221
> 0 13aa, >Cluster 4004... *
> >Cluster 222
> 0 13aa, >Cluster 4115... *
> >Cluster 223
> 0 13aa, >Cluster 4119... *
> >Cluster 224
> 0 13aa, >Cluster 4139... *
> >Cluster 225
> 0 13aa, >Cluster 4181... *
> >Cluster 226
> 0 13aa, >Cluster 4184... *
> >Cluster 227
> 0 13aa, >Cluster 4195... *
> >Cluster 228
> 0 13aa, >Cluster 4243... *
> >Cluster 229
> 0 13aa, >Cluster 4247... *
> >Cluster 230
> 0 13aa, >Cluster 4324... *
> >Cluster 231
> 0 13aa, >Cluster 4331... *
> >Cluster 232
> 0 13aa, >Cluster 4377... *
> >Cluster 233
> 0 13aa, >Cluster 4426... *
> >Cluster 234
> 0 13aa, >Cluster 4587... *
> >Cluster 235
> 0 13aa, >Cluster 4594... *
> >Cluster 236
> 0 13aa, >Cluster 4671... *
> >Cluster 237
> 0 13aa, >Cluster 4740... *
> >Cluster 238
> 0 13aa, >Cluster 5015... *
> >Cluster 239
> 0 13aa, >Cluster 5091... *
> >Cluster 240
> 0 13aa, >Cluster 5102... *
> >Cluster 241
> 0 13aa, >Cluster 5182... *
> >Cluster 242
> 0 13aa, >Cluster 5217... *
> >Cluster 243
> 0 13aa, >Cluster 5354... *
> >Cluster 244
> 0 13aa, >Cluster 5360... *
> >Cluster 245
> 0 13aa, >Cluster 5602... *
> >Cluster 246
> 0 13aa, >Cluster 5642... *
> >Cluster 247
> 0 13aa, >Cluster 5682... *
> >Cluster 248
> 0 13aa, >Cluster 5693... *
> >Cluster 249
> 0 13aa, >Cluster 5844... *
> >Cluster 250
> 0 13aa, >Cluster 6013... *
> >Cluster 251
> 0 13aa, >Cluster 6099... *
> >Cluster 252
> 0 13aa, >Cluster 6100... *
> >Cluster 253
> 0 13aa, >Cluster 6121... *
> >Cluster 254
> 0 13aa, >Cluster 6154... *
> >Cluster 255
> 0 13aa, >Cluster 6176... *
> >Cluster 256
> 0 13aa, >Cluster 6249... *
> >Cluster 257
> 0 13aa, >Cluster 6348... *
> >Cluster 258
> 0 13aa, >Cluster 6361... *
> >Cluster 259
> 0 13aa, >Cluster 6364... *
> >Cluster 260
> 0 13aa, >Cluster 6502... *
> >Cluster 261
> 0 13aa, >Cluster 6657... *
> >Cluster 262
> 0 13aa, >Cluster 6709... *
> >Cluster 263
> 0 13aa, >Cluster 6727... *
> >Cluster 264
> 0 13aa, >Cluster 6851... *
> >Cluster 265
> 0 13aa, >Cluster 6870... *
> >Cluster 266
> 0 13aa, >Cluster 6914... *
> >Cluster 267
> 0 13aa, >Cluster 7252... *
> >Cluster 268
> 0 13aa, >Cluster 7419... *
> >Cluster 269
> 0 13aa, >Cluster 7426... *
> >Cluster 270
> 0 13aa, >Cluster 7528... *
> >Cluster 271
> 0 13aa, >Cluster 7590... *
> >Cluster 272
> 0 13aa, >Cluster 8112... *
> >Cluster 273
> 0 13aa, >Cluster 8129... *
> >Cluster 274
> 0 13aa, >Cluster 8157... *
> >Cluster 275
> 0 13aa, >Cluster 8261... *
> >Cluster 276
> 0 13aa, >Cluster 8531... *
> >Cluster 277
> 0 13aa, >Cluster 8808... *
> >Cluster 278
> 0 13aa, >Cluster 8840... *
> >Cluster 279
> 0 13aa, >Cluster 8985... *
> >Cluster 280
> 0 13aa, >Cluster 9186... *
> >Cluster 281
> 0 13aa, >Cluster 9201... *
> >Cluster 282
> 0 13aa, >Cluster 9268... *
> >Cluster 283
> 0 13aa, >Cluster 9354... *
> >Cluster 284
> 0 13aa, >Cluster 9356... *
> >Cluster 285
> 0 13aa, >Cluster 9538... *
> >Cluster 286
> 0 13aa, >Cluster 9675... *
> >Cluster 287
> 0 13aa, >Cluster 9692... *
> >Cluster 288
> 0 13aa, >Cluster 9695... *
> >Cluster 289
> 0 13aa, >Cluster 9746... *
> >Cluster 290
> 0 13aa, >Cluster 9769... *
> >Cluster 291
> 0 13aa, >Cluster 9814... *
> >Cluster 292
> 0 13aa, >Cluster 10011... *
> >Cluster 293
> 0 13aa, >Cluster 10214... *
> >Cluster 294
> 0 13aa, >Cluster 10251... *
> >Cluster 295
> 0 13aa, >Cluster 10361... *
> >Cluster 296
> 0 13aa, >Cluster 10450... *
> >Cluster 297
> 0 13aa, >Cluster 10518... *
> >Cluster 298
> 0 13aa, >Cluster 10648... *
> >Cluster 299
> 0 13aa, >Cluster 10962... *
> >Cluster 300
> 0 13aa, >Cluster 11121... *
> >Cluster 301
> 0 13aa, >Cluster 11151... *
> >Cluster 302
> 0 13aa, >Cluster 11519... *
> >Cluster 303
> 0 13aa, >Cluster 11632... *
> >Cluster 304
> 0 13aa, >Cluster 11867... *
> >Cluster 305
> 0 13aa, >Cluster 11976... *
> >Cluster 306
> 0 13aa, >Cluster 12006... *
> >Cluster 307
> 0 13aa, >Cluster 12197... *
> >Cluster 308
> 0 13aa, >Cluster 12363... *
> >Cluster 309
> 0 13aa, >Cluster 13957... *
> >Cluster 310
> 0 12aa, >Cluster 40... *
> >Cluster 311
> 0 12aa, >Cluster 51... *
> >Cluster 312
> 0 12aa, >Cluster 59... *
> >Cluster 313
> 0 12aa, >Cluster 61... *
> >Cluster 314
> 0 12aa, >Cluster 69... *
> >Cluster 315
> 0 12aa, >Cluster 72... *
> >Cluster 316
> 0 12aa, >Cluster 111... *
> >Cluster 317
> 0 12aa, >Cluster 116... *
> >Cluster 318
> 0 12aa, >Cluster 126... *
> >Cluster 319
> 0 12aa, >Cluster 195... *
> >Cluster 320
> 0 12aa, >Cluster 283... *
> >Cluster 321
> 0 12aa, >Cluster 346... *
> >Cluster 322
> 0 12aa, >Cluster 384... *
> >Cluster 323
> 0 12aa, >Cluster 394... *
> >Cluster 324
> 0 12aa, >Cluster 406... *
> >Cluster 325
> 0 12aa, >Cluster 416... *
> >Cluster 326
> 0 12aa, >Cluster 419... *
> >Cluster 327
> 0 12aa, >Cluster 426... *
> >Cluster 328
> 0 12aa, >Cluster 489... *
> >Cluster 329
> 0 12aa, >Cluster 522... *
> >Cluster 330
> 0 12aa, >Cluster 674... *
> >Cluster 331
> 0 12aa, >Cluster 677... *
> >Cluster 332
> 0 12aa, >Cluster 808... *
> >Cluster 333
> 0 12aa, >Cluster 947... *
> >Cluster 334
> 0 12aa, >Cluster 1015... *
> >Cluster 335
> 0 12aa, >Cluster 1053... *
> >Cluster 336
> 0 12aa, >Cluster 1085... *
> >Cluster 337
> 0 12aa, >Cluster 1125... *
> >Cluster 338
> 0 12aa, >Cluster 1154... *
> >Cluster 339
> 0 12aa, >Cluster 1235... *
> >Cluster 340
> 0 12aa, >Cluster 1264... *
> >Cluster 341
> 0 12aa, >Cluster 1296... *
> >Cluster 342
> 0 12aa, >Cluster 1314... *
> >Cluster 343
> 0 12aa, >Cluster 1385... *
> >Cluster 344
> 0 12aa, >Cluster 1451... *
> >Cluster 345
> 0 12aa, >Cluster 1462... *
> >Cluster 346
> 0 12aa, >Cluster 1479... *
> >Cluster 347
> 0 12aa, >Cluster 1541... *
> >Cluster 348
> 0 12aa, >Cluster 1610... *
> >Cluster 349
> 0 12aa, >Cluster 1663... *
> >Cluster 350
> 0 12aa, >Cluster 1672... *
> >Cluster 351
> 0 12aa, >Cluster 1703... *
> >Cluster 352
> 0 12aa, >Cluster 1817... *
> >Cluster 353
> 0 12aa, >Cluster 1911... *
> >Cluster 354
> 0 12aa, >Cluster 1965... *
> >Cluster 355
> 0 12aa, >Cluster 2051... *
> >Cluster 356
> 0 12aa, >Cluster 2151... *
> >Cluster 357
> 0 12aa, >Cluster 2212... *
> >Cluster 358
> 0 12aa, >Cluster 2236... *
> >Cluster 359
> 0 12aa, >Cluster 2323... *
> >Cluster 360
> 0 12aa, >Cluster 2530... *
> >Cluster 361
> 0 12aa, >Cluster 2555... *
> >Cluster 362
> 0 12aa, >Cluster 2620... *
> >Cluster 363
> 0 12aa, >Cluster 2706... *
> >Cluster 364
> 0 12aa, >Cluster 2755... *
> >Cluster 365
> 0 12aa, >Cluster 2818... *
> >Cluster 366
> 0 12aa, >Cluster 2824... *
> >Cluster 367
> 0 12aa, >Cluster 2870... *
> >Cluster 368
> 0 12aa, >Cluster 2910... *
> >Cluster 369
> 0 12aa, >Cluster 3140... *
> >Cluster 370
> 0 12aa, >Cluster 3213... *
> >Cluster 371
> 0 12aa, >Cluster 3285... *
> >Cluster 372
> 0 12aa, >Cluster 3364... *
> >Cluster 373
> 0 12aa, >Cluster 3374... *
> >Cluster 374
> 0 12aa, >Cluster 3603... *
> >Cluster 375
> 0 12aa, >Cluster 3663... *
> >Cluster 376
> 0 12aa, >Cluster 3692... *
> >Cluster 377
> 0 12aa, >Cluster 3833... *
> >Cluster 378
> 0 12aa, >Cluster 3940... *
> >Cluster 379
> 0 12aa, >Cluster 4081... *
> >Cluster 380
> 0 12aa, >Cluster 4224... *
> >Cluster 381
> 0 12aa, >Cluster 4252... *
> >Cluster 382
> 0 12aa, >Cluster 4274... *
> >Cluster 383
> 0 12aa, >Cluster 4333... *
> >Cluster 384
> 0 12aa, >Cluster 4364... *
> >Cluster 385
> 0 12aa, >Cluster 4402... *
> >Cluster 386
> 0 12aa, >Cluster 4427... *
> >Cluster 387
> 0 12aa, >Cluster 4511... *
> >Cluster 388
> 0 12aa, >Cluster 4548... *
> >Cluster 389
> 0 12aa, >Cluster 4575... *
> >Cluster 390
> 0 12aa, >Cluster 4586... *
> >Cluster 391
> 0 12aa, >Cluster 4604... *
> >Cluster 392
> 0 12aa, >Cluster 4637... *
> >Cluster 393
> 0 12aa, >Cluster 5204... *
> >Cluster 394
> 0 12aa, >Cluster 5398... *
> >Cluster 395
> 0 12aa, >Cluster 5455... *
> >Cluster 396
> 0 12aa, >Cluster 5515... *
> >Cluster 397
> 0 12aa, >Cluster 5662... *
> >Cluster 398
> 0 12aa, >Cluster 5683... *
> >Cluster 399
> 0 12aa, >Cluster 5698... *
> >Cluster 400
> 0 12aa, >Cluster 5789... *
> >Cluster 401
> 0 12aa, >Cluster 5882... *
> >Cluster 402
> 0 12aa, >Cluster 5989... *
> >Cluster 403
> 0 12aa, >Cluster 6056... *
> >Cluster 404
> 0 12aa, >Cluster 6060... *
> >Cluster 405
> 0 12aa, >Cluster 6088... *
> >Cluster 406
> 0 12aa, >Cluster 6297... *
> >Cluster 407
> 0 12aa, >Cluster 6421... *
> >Cluster 408
> 0 12aa, >Cluster 6479... *
> >Cluster 409
> 0 12aa, >Cluster 6650... *
> >Cluster 410
> 0 12aa, >Cluster 6798... *
> >Cluster 411
> 0 12aa, >Cluster 6965... *
> >Cluster 412
> 0 12aa, >Cluster 6967... *
> >Cluster 413
> 0 12aa, >Cluster 7022... *
> >Cluster 414
> 0 12aa, >Cluster 7043... *
> >Cluster 415
> 0 12aa, >Cluster 7622... *
> >Cluster 416
> 0 12aa, >Cluster 7690... *
> >Cluster 417
> 0 12aa, >Cluster 7847... *
> >Cluster 418
> 0 12aa, >Cluster 7849... *
> >Cluster 419
> 0 12aa, >Cluster 7962... *
> >Cluster 420
> 0 12aa, >Cluster 7987... *
> >Cluster 421
> 0 12aa, >Cluster 8026... *
> >Cluster 422
> 0 12aa, >Cluster 8081... *
> >Cluster 423
> 0 12aa, >Cluster 8084... *
> >Cluster 424
> 0 12aa, >Cluster 8198... *
> >Cluster 425
> 0 12aa, >Cluster 8275... *
> >Cluster 426
> 0 12aa, >Cluster 8546... *
> >Cluster 427
> 0 12aa, >Cluster 8563... *
> >Cluster 428
> 0 12aa, >Cluster 8637... *
> >Cluster 429
> 0 12aa, >Cluster 8652... *
> >Cluster 430
> 0 12aa, >Cluster 8806... *
> >Cluster 431
> 0 12aa, >Cluster 8845... *
> >Cluster 432
> 0 12aa, >Cluster 8996... *
> >Cluster 433
> 0 12aa, >Cluster 9001... *
> >Cluster 434
> 0 12aa, >Cluster 9017... *
> >Cluster 435
> 0 12aa, >Cluster 9120... *
> >Cluster 436
> 0 12aa, >Cluster 9183... *
> >Cluster 437
> 0 12aa, >Cluster 9347... *
> >Cluster 438
> 0 12aa, >Cluster 9427... *
> >Cluster 439
> 0 12aa, >Cluster 9472... *
> >Cluster 440
> 0 12aa, >Cluster 9661... *
> >Cluster 441
> 0 12aa, >Cluster 9770... *
> >Cluster 442
> 0 12aa, >Cluster 9906... *
> >Cluster 443
> 0 12aa, >Cluster 9974... *
> >Cluster 444
> 0 12aa, >Cluster 10101... *
> >Cluster 445
> 0 12aa, >Cluster 10474... *
> >Cluster 446
> 0 12aa, >Cluster 10527... *
> >Cluster 447
> 0 12aa, >Cluster 10600... *
> >Cluster 448
> 0 12aa, >Cluster 10750... *
> >Cluster 449
> 0 12aa, >Cluster 10784... *
> >Cluster 450
> 0 12aa, >Cluster 10944... *
> >Cluster 451
> 0 12aa, >Cluster 10957... *
> >Cluster 452
> 0 12aa, >Cluster 10999... *
> >Cluster 453
> 0 12aa, >Cluster 11137... *
> >Cluster 454
> 0 12aa, >Cluster 11231... *
> >Cluster 455
> 0 12aa, >Cluster 11354... *
> >Cluster 456
> 0 12aa, >Cluster 11475... *
> >Cluster 457
> 0 12aa, >Cluster 11501... *
> >Cluster 458
> 0 12aa, >Cluster 11646... *
> >Cluster 459
> 0 12aa, >Cluster 11661... *
> >Cluster 460
> 0 12aa, >Cluster 11738... *
> >Cluster 461
> 0 12aa, >Cluster 11885... *
> >Cluster 462
> 0 12aa, >Cluster 11919... *
> >Cluster 463
> 0 12aa, >Cluster 12947... *
> >Cluster 464
> 0 12aa, >Cluster 13014... *
> >Cluster 465
> 0 12aa, >Cluster 13061... *
> >Cluster 466
> 0 12aa, >Cluster 13438... *
> >Cluster 467
> 0 12aa, >Cluster 13567... *
> >Cluster 468
> 0 12aa, >Cluster 13784... *
> >Cluster 469
> 0 12aa, >Cluster 14713... *
> >Cluster 470
> 0 11aa, >Cluster 37... *
> >Cluster 471
> 0 11aa, >Cluster 80... *
> >Cluster 472
> 0 11aa, >Cluster 115... *
> >Cluster 473
> 0 11aa, >Cluster 130... *
> >Cluster 474
> 0 11aa, >Cluster 153... *
> >Cluster 475
> 0 11aa, >Cluster 235... *
> >Cluster 476
> 0 11aa, >Cluster 275... *
> >Cluster 477
> 0 11aa, >Cluster 328... *
> >Cluster 478
> 0 11aa, >Cluster 342... *
> >Cluster 479
> 0 11aa, >Cluster 435... *
> >Cluster 480
> 0 11aa, >Cluster 438... *
> >Cluster 481
> 0 11aa, >Cluster 456... *
> >Cluster 482
> 0 11aa, >Cluster 488... *
> >Cluster 483
> 0 11aa, >Cluster 549... *
> >Cluster 484
> 0 11aa, >Cluster 552... *
> >Cluster 485
> 0 11aa, >Cluster 581... *
> >Cluster 486
> 0 11aa, >Cluster 585... *
> >Cluster 487
> 0 11aa, >Cluster 591... *
> >Cluster 488
> 0 11aa, >Cluster 624... *
> >Cluster 489
> 0 11aa, >Cluster 627... *
> >Cluster 490
> 0 11aa, >Cluster 640... *
> >Cluster 491
> 0 11aa, >Cluster 767... *
> >Cluster 492
> 0 11aa, >Cluster 774... *
> >Cluster 493
> 0 11aa, >Cluster 898... *
> >Cluster 494
> 0 11aa, >Cluster 901... *
> >Cluster 495
> 0 11aa, >Cluster 921... *
> >Cluster 496
> 0 11aa, >Cluster 948... *
> >Cluster 497
> 0 11aa, >Cluster 997... *
> >Cluster 498
> 0 11aa, >Cluster 1024... *
> >Cluster 499
> 0 11aa, >Cluster 1066... *
> >Cluster 500
> 0 11aa, >Cluster 1077... *
> >Cluster 501
> 0 11aa, >Cluster 1091... *
> >Cluster 502
> 0 11aa, >Cluster 1098... *
> >Cluster 503
> 0 11aa, >Cluster 1208... *
> >Cluster 504
> 0 11aa, >Cluster 1337... *
> >Cluster 505
> 0 11aa, >Cluster 1355... *
> >Cluster 506
> 0 11aa, >Cluster 1485... *
> >Cluster 507
> 0 11aa, >Cluster 1495... *
> >Cluster 508
> 0 11aa, >Cluster 1735... *
> >Cluster 509
> 0 11aa, >Cluster 1825... *
> >Cluster 510
> 0 11aa, >Cluster 1892... *
> >Cluster 511
> 0 11aa, >Cluster 1948... *
> >Cluster 512
> 0 11aa, >Cluster 2031... *
> >Cluster 513
> 0 11aa, >Cluster 2064... *
> >Cluster 514
> 0 11aa, >Cluster 2104... *
> >Cluster 515
> 0 11aa, >Cluster 2213... *
> >Cluster 516
> 0 11aa, >Cluster 2325... *
> >Cluster 517
> 0 11aa, >Cluster 2338... *
> >Cluster 518
> 0 11aa, >Cluster 2452... *
> >Cluster 519
> 0 11aa, >Cluster 2478... *
> >Cluster 520
> 0 11aa, >Cluster 2501... *
> >Cluster 521
> 0 11aa, >Cluster 2663... *
> >Cluster 522
> 0 11aa, >Cluster 2671... *
> >Cluster 523
> 0 11aa, >Cluster 2691... *
> >Cluster 524
> 0 11aa, >Cluster 2735... *
> >Cluster 525
> 0 11aa, >Cluster 2825... *
> >Cluster 526
> 0 11aa, >Cluster 2837... *
> >Cluster 527
> 0 11aa, >Cluster 2844... *
> >Cluster 528
> 0 11aa, >Cluster 2860... *
> >Cluster 529
> 0 11aa, >Cluster 2955... *
> >Cluster 530
> 0 11aa, >Cluster 3074... *
> >Cluster 531
> 0 11aa, >Cluster 3103... *
> >Cluster 532
> 0 11aa, >Cluster 3104... *
> >Cluster 533
> 0 11aa, >Cluster 3166... *
> >Cluster 534
> 0 11aa, >Cluster 3174... *
> >Cluster 535
> 0 11aa, >Cluster 3302... *
> >Cluster 536
> 0 11aa, >Cluster 3453... *
> >Cluster 537
> 0 11aa, >Cluster 3721... *
> >Cluster 538
> 0 11aa, >Cluster 3723... *
> >Cluster 539
> 0 11aa, >Cluster 3859... *
> >Cluster 540
> 0 11aa, >Cluster 3872... *
> >Cluster 541
> 0 11aa, >Cluster 3887... *
> >Cluster 542
> 0 11aa, >Cluster 3910... *
> >Cluster 543
> 0 11aa, >Cluster 3915... *
> >Cluster 544
> 0 11aa, >Cluster 3966... *
> >Cluster 545
> 0 11aa, >Cluster 4150... *
> >Cluster 546
> 0 11aa, >Cluster 4240... *
> >Cluster 547
> 0 11aa, >Cluster 4258... *
> >Cluster 548
> 0 11aa, >Cluster 4321... *
> >Cluster 549
> 0 11aa, >Cluster 4462... *
> >Cluster 550
> 0 11aa, >Cluster 4557... *
> >Cluster 551
> 0 11aa, >Cluster 4564... *
> >Cluster 552
> 0 11aa, >Cluster 4589... *
> >Cluster 553
> 0 11aa, >Cluster 4612... *
> >Cluster 554
> 0 11aa, >Cluster 4617... *
> >Cluster 555
> 0 11aa, >Cluster 4690... *
> >Cluster 556
> 0 11aa, >Cluster 4692... *
> >Cluster 557
> 0 11aa, >Cluster 4779... *
> >Cluster 558
> 0 11aa, >Cluster 4906... *
> >Cluster 559
> 0 11aa, >Cluster 5063... *
> >Cluster 560
> 0 11aa, >Cluster 5076... *
> >Cluster 561
> 0 11aa, >Cluster 5085... *
> >Cluster 562
> 0 11aa, >Cluster 5170... *
> >Cluster 563
> 0 11aa, >Cluster 5185... *
> >Cluster 564
> 0 11aa, >Cluster 5195... *
> >Cluster 565
> 0 11aa, >Cluster 5196... *
> >Cluster 566
> 0 11aa, >Cluster 5254... *
> >Cluster 567
> 0 11aa, >Cluster 5364... *
> >Cluster 568
> 0 11aa, >Cluster 5409... *
> >Cluster 569
> 0 11aa, >Cluster 5443... *
> >Cluster 570
> 0 11aa, >Cluster 5476... *
> >Cluster 571
> 0 11aa, >Cluster 5593... *
> >Cluster 572
> 0 11aa, >Cluster 5725... *
> >Cluster 573
> 0 11aa, >Cluster 5808... *
> >Cluster 574
> 0 11aa, >Cluster 5869... *
> >Cluster 575
> 0 11aa, >Cluster 5912... *
> >Cluster 576
> 0 11aa, >Cluster 5924... *
> >Cluster 577
> 0 11aa, >Cluster 6143... *
> >Cluster 578
> 0 11aa, >Cluster 6147... *
> >Cluster 579
> 0 11aa, >Cluster 6326... *
> >Cluster 580
> 0 11aa, >Cluster 6384... *
> >Cluster 581
> 0 11aa, >Cluster 6556... *
> >Cluster 582
> 0 11aa, >Cluster 6764... *
> >Cluster 583
> 0 11aa, >Cluster 6782... *
> >Cluster 584
> 0 11aa, >Cluster 6811... *
> >Cluster 585
> 0 11aa, >Cluster 6867... *
> >Cluster 586
> 0 11aa, >Cluster 7160... *
> >Cluster 587
> 0 11aa, >Cluster 7182... *
> >Cluster 588
> 0 11aa, >Cluster 7224... *
> >Cluster 589
> 0 11aa, >Cluster 7543... *
> >Cluster 590
> 0 11aa, >Cluster 7550... *
> >Cluster 591
> 0 11aa, >Cluster 7565... *
> >Cluster 592
> 0 11aa, >Cluster 7708... *
> >Cluster 593
> 0 11aa, >Cluster 7763... *
> >Cluster 594
> 0 11aa, >Cluster 7965... *
> >Cluster 595
> 0 11aa, >Cluster 7993... *
> >Cluster 596
> 0 11aa, >Cluster 8077... *
> >Cluster 597
> 0 11aa, >Cluster 8238... *
> >Cluster 598
> 0 11aa, >Cluster 8301... *
> >Cluster 599
> 0 11aa, >Cluster 8365... *
> >Cluster 600
> 0 11aa, >Cluster 8854... *
> >Cluster 601
> 0 11aa, >Cluster 9159... *
> >Cluster 602
> 0 11aa, >Cluster 9176... *
> >Cluster 603
> 0 11aa, >Cluster 9303... *
> >Cluster 604
> 0 11aa, >Cluster 9321... *
> >Cluster 605
> 0 11aa, >Cluster 9441... *
> >Cluster 606
> 0 11aa, >Cluster 9469... *
> >Cluster 607
> 0 11aa, >Cluster 9516... *
> >Cluster 608
> 0 11aa, >Cluster 9730... *
> >Cluster 609
> 0 11aa, >Cluster 9800... *
> >Cluster 610
> 0 11aa, >Cluster 10147... *
> >Cluster 611
> 0 11aa, >Cluster 10181... *
> >Cluster 612
> 0 11aa, >Cluster 10253... *
> >Cluster 613
> 0 11aa, >Cluster 10714... *
> >Cluster 614
> 0 11aa, >Cluster 10968... *
> >Cluster 615
> 0 11aa, >Cluster 11025... *
> >Cluster 616
> 0 11aa, >Cluster 11053... *
> >Cluster 617
> 0 11aa, >Cluster 11284... *
> >Cluster 618
> 0 11aa, >Cluster 12381... *
> >Cluster 619
> 0 11aa, >Cluster 12418... *
> >Cluster 620
> 0 11aa, >Cluster 12784... *
> >Cluster 621
> 0 11aa, >Cluster 13017... *
>
> _______________________________________________
> BBB mailing list
> BBB at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/bbb
>
> _______________________________________________
> CD-HIT-l mailing list
> CD-HIT-l at bioinformatics.org
> http://www.bioinformatics.org/mailman/listinfo/cd-hit-l
More information about the BBB
mailing list