[BiO BB] what is the best software/algorithm for miRNA target prediction ?

[Dan Bolser]

Hi Ilgar,

You could try looking on SEQwiki, a wiki database of software tools
for next generation sequencing.

http://seqanswers.com/wiki/SEQanswers


For anyone who is interested, I'm trying to syndicate the data in
SEQwiki onto the Bioinformatics.Org wiki, but for some reason it isn't
working. However, a working example of this kind of syndication is
available here:

http://projects.csail.mit.edu/wibit/wiki/index.php?title=Biotech_Software


HTH,
Dan.

On 10 February 2010 20:55, Ilgar Abdullayev <kry.kieslowski at gmail.com> wrote:
> Dear all,
>
> I'm a master student who is trying to write a master thesis about predicting
> miRNA targets.  I was wondering if somebody could advise me the best
> software/algorithm for miRNA target prediction. Or the one that scientific
> community uses the most.
> I would really appreciate any kinds of help/advise.
>
> Thanks in advance
>
> Ilgar Abdullayev
> Computational and Systems Biology
> Royal Institute of Technology
> Stockholm Sweden
> Tel: +46 707 821 954
>
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