[BiO BB] proteins related to a particular disease/condition

Seema Trivedi svtrived at hotmail.com
Thu Mar 11 09:27:21 EST 2010


Hi once again

In addition to the NCBI you can try to Gene Ontology GO (or Amigo) database. From here you can give the search term, get either the protein/gene IDs or GO Ids. These IDs can then be searched at NCBI or SwissProt.

S Trivedi




 
> Date: Wed, 10 Mar 2010 11:47:39 -0800
> From: drjohn08318 at yahoo.com
> To: bbb at bioinformatics.org
> CC: bbb at bioinformatics.org
> Subject: Re: [BiO BB] proteins related to a particular disease/condition
> 
> Hi Pankaj:
> I doubt this information has been compiled into a neat little table or list. You will probably have to do a Pubmed search and bring together these data from multiple sources. Also, if you go to www.NCBI.nlm.NIH.gov, select "protein" from the pull-down menu, and search for "hypoxia", you will find a list if proteins shown to be modulated by hypoxia. 
> John 
> 
> 
> John G. Hoey, Ph.D.
> 
> Sent from my iPhone
> 
> On Mar 9, 2010, at 1:34, Pankaj Khurana <pkhurana08 at gmail.com> wrote:
> 
> Hi all,
> 
> I would like to get a list of all proteins that are
> upregulated/downregulated during hypoxia.
> How can I get a list of these proteins?
> 
> Thanking all in advance
> Dr. Pankaj Khurana
> India
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