[BioBrew Users] : how to run mpiblast

[kenix y]

Trying to break
ecoli.nt (5MB) into 3 fragments of 2MB Executing : formatdb -i
ecoli.nt -o T -p F -v 2")

What happens when you try to break it into 5 fragments?
/opt/BioBrew/NCBI/6.1.0/bin/mpiformatdb -f /home/bigcpuguest/mpiblast.conf 
-N 5 -i ecoli.nt -o T -p F

Trying to break ecoli.nt (5MB) into 5 fragments of 1 MB
Executing: formatdb -i ecoli.nt -o T -p F -v 1

Moving fragments to /mnt/pvfs
mv: cannot stat 'ecoli.nt.nal': No such file or directory
Created and moved 5 fragments.

What ecoli.nt.n* files are created?

ecoli.nt.00.nhr
ecoli.nt.00.nin
ecoli.nt.00.nnd
ecoli.nt.00.nni
ecoli.nt.00.nsd
ecoli.nt.00.nsi
ecoli.nt.00.nsq
. . .

_________________________________________________________________
Find love on MSN Personals http://personals.msn.com.sg/