[BioBrew Users] : how to run mpiblast

Glen Otero gotero at linuxprophet.com
Fri Jul 16 02:38:22 EDT 2004


On Jul 15, 2004, at 11:29 PM, kenix y wrote:

> How big is ecoli.nt
> Around 5MB
> (when I type the command just now, the response is "Trying to break 
> ecoli.nt (5MB) into 3 fragments of 2MB Executing : formatdb -i 
> ecoli.nt -o T -p F -v 2")

What happens when you try to break it into 5 fragments?
>
> What happens when you try to format it with regular formatdb?
> when I /opt/BioBrew/NCBI/6.1.0/bin/formatdb -i ecoli.nt -o T -p F
> ecoli.nt is broken into fragments and being stored at 
> /home/bigcpuguest but there is no ecoli.nt.nal.

What ecoli.nt.n* files are created?
>
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Glen Otero, Ph.D.
Linux Prophet
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