[BioBrew Users] re:EMBOSS

[kenix y]

Sorry I had not try out the other method mention by David Lapointe
  -n  Base name for BLAST files [String]  Optional
But mpiBLAST works fine for me if I just edit the DBLIST of (null).nal and 
save ti as ecoli.nt.nal
I will try his method asap.

About EMBOSS, I have not tried building from srpm before, so I think I will 
take some time.

Thanks

>Hmmm....looks like the package was built with some hard-coded paths. Not 
>good. I've posted the srpm at http://bioinformatics.org/ftp/biobrew/srpm so 
>you can try and rebuild it on your cluster frontend yourself. I'll try to 
>build it myself tomorrow.
>
>Does this mean you got mpiBLAST to work?
>
>Glen
>
>On Jul 22, 2004, at 9:04 PM, kenix y wrote:
>
>>Hi,
>>
>>I came across this same error as Khalil, while trying to run any emboss 
>>application I get this:
>>error while loading shared libraries: libnucleus.so.0: cannot open
>>shared object file: no such file or directory.
>>
>>The file is located at /opt/BioBrew/EMBOSS/2.6.0/lib/
>>
>>I followed the instructions:
>>
>>In your
>>~/.bashrc, write:
>>
>>export LD_LIBRARY_PATH=/opt/BioBrew/EMBOSS/2.6.0/lib:$LD_LIBRARY_PATH
>>
>>then either log out and log back in, or source your ~/.bashrc to export
>>the variable in your shell
>>
>>and the error changed to:
>>
>>EMOSS An error in ajacd.c at line 1534:
>>acdfile 
>>'/home/build/BuildRoot-ia32/BUILD/EMBOSS-2.6.0/emboss/acd/pepnet.acd' not 
>>opened
>>
>>Is there something else I can do or should I download the other rpm at 
>>http://bioinformatics.org/ftp/biobrew/rpms/
>>
>>Thank you.
>>

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