[BioBrew Users] re:EMBOSS

[Glen Otero]

Hmmm....looks like the package was built with some hard-coded paths. 
Not good. I've posted the srpm at 
http://bioinformatics.org/ftp/biobrew/srpm so you can try and rebuild 
it on your cluster frontend yourself. I'll try to build it myself 
tomorrow.

Does this mean you got mpiBLAST to work?

Glen

On Jul 22, 2004, at 9:04 PM, kenix y wrote:

> Hi,
>
> I came across this same error as Khalil, while trying to run any 
> emboss application I get this:
> error while loading shared libraries: libnucleus.so.0: cannot open
> shared object file: no such file or directory.
>
> The file is located at /opt/BioBrew/EMBOSS/2.6.0/lib/
>
> I followed the instructions:
>
> In your
> ~/.bashrc, write:
>
> export LD_LIBRARY_PATH=/opt/BioBrew/EMBOSS/2.6.0/lib:$LD_LIBRARY_PATH
>
> then either log out and log back in, or source your ~/.bashrc to export
> the variable in your shell
>
> and the error changed to:
>
> EMOSS An error in ajacd.c at line 1534:
> acdfile 
> '/home/build/BuildRoot-ia32/BUILD/EMBOSS-2.6.0/emboss/acd/pepnet.acd' 
> not opened
>
> Is there something else I can do or should I download the other rpm at 
> http://bioinformatics.org/ftp/biobrew/rpms/
>
> Thank you.
>
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Glen Otero, Ph.D.
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