Eric Engelhard wrote: > Jeff Layton wrote: > [snip] > > If you have the memory, why not make a RAM disk to store any > > local information (I guess it depends on the size of the database). > > However, have you seen the new motherboards from Tyan and > > Supermicro that can handle up to 16 Gigs of DDR!? Very cool > > possibilities now. > > An interesting idea. One issue I have, however, is the need to BLAST > genomic vs genomic without masking for repetitive sequence. BLAST > tackles this by storing a huge number of alignments and often delivers > 80MB+ result files. Sure, I can parse the result on the fly before > sending it back to the master node, but I have never paid attention to > RAM usage under these circumstances. I will make a note to check during > the next batch. In any event, RAM may be cheaper now, but a 40GB IDE or > even high end SCSI is far, far cheaper than 16GB of DDR. Agreed. Good observation. However, the speed freak in me is just drooling over 16 Gigs on a single motherboard. Thanks! Jeff > > > -- > Eric Engelhard - www.cvbig.org - www.sagresdiscovery.com > _______________________________________________ > Bioclusters maillist - Bioclusters@bioinformatics.org > http://bioinformatics.org/mailman/listinfo/bioclusters