[Bioclusters] Blast, PBS and Globus

Massimo Canonico bioclusters@bioinformatics.org
Fri, 22 Nov 2002 17:06:50 +0100

Hi all,
I would ask you how do you manage this situation? 

My job must run 3 executable command (blast):

#blast -input A -output A1
#blast -input B -output B1
#blast -input C -output C1

1) How do you organize this job?

	- 3 PBS script like:
	#PBS -l nodes=1
	blast -input X -output X1

	And a main script like:
	qsub script1
	qsub script2
	qsub script3

2) I would get only one output (the concatenation of A1 B1 C1), because
I must
use globus-job-run:

	#globus-job-run remotehost/jobmanager-pbs scriptPBS

Have you a solution to get a global output?


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