> Hello, > > I have uploaded files (in the patches section of > http://sourceforge.net/projects/mpiblast/) that implement the following > changes to mpiformatdb and mpiblast: I am getting a compiler error when applying these patches: <snip> Making all in src make[1]: Entering directory `/home/user/jeremy/NCBI/mpiBLAST-1.1.0-patched/src' source='mpiblast.cpp' object='mpiblast.o' libtool=no \ depfile='.deps/mpiblast.Po' tmpdepfile='.deps/mpiblast.TPo' \ depmode=gcc3 /bin/sh ../depcomp \ mpiCC -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"mpiBLAST\" -DVERSION=\"1.1.0\" -DSTDC_HEADERS=1 -D_FILE_OFFSET_BITS=64 -DTIME_WITH_SYS_TIME=1 -I. -I. -I../include/ -I/home/user/jeremy/NCBI/ncbi/include/ -O2 -DINSTALL_PREFIX="\"/usr/local\"" -c -o mpiblast.o `test -f 'mpiblast.cpp' || echo './'`mpiblast.cpp mpiblast.cpp: In member function `void MpiBlast::sendResults(std::string&, int, int)': mpiblast.cpp:218: `bin' is not a member of type `std::basic_ios<char, std::char_traits<char> >' mpiblast.cpp:248: choosing `std::fpos<_StateT> std::fpos<_StateT>::operator-(long int) [with _StateT = mbstate_t]' over ` operator-' mpiblast.cpp:248: because worst conversion for the former is better than worst conversion for the latter make[1]: *** [mpiblast.o] Error 1 make[1]: Leaving directory `/home/user/jeremy/NCBI/mpiBLAST-1.1.0-patched/src' make: *** [all-recursive] Error 1 System: Slackware 9.0, Glibc 2.3 and GCC 3.2 -- Jeremy Mann jeremy@biochem.uthscsa.edu University of Texas Health Science Center Bioinformatics Core Facility http://www.bioinformatics.uthscsa.edu Phone: (210) 567-2672