We are using in-house perl scripts, in crontab, that uses wget to pull updates from the DB. Perl is great for parsing, so thats what my developers are using. Unfortunatly I cant copy the script in here, but I can tell you it relies on the wget heavily, and perl provides the transition to populate our DB Hope that helps Nox GenMicro Systems On Thu, 2003-09-18 at 09:46, Osborne, John wrote: > Hi everyone, > What are people out there doing to get a local copy of NCBI's databases? I > mean RefSeq, dbSNP, taxonomy, etc... We've been updating our copy ad-hoc by > ftp, are most people just putting this into a cron job? > > I've heard that the NCBI tookkit offers something like this (to get daily > updates via web services or something) but I don't know where to look. > getseq looks suspicious but I need to configure it using entrez2, which > needs X Windows, which needs vibrant, which means RH dependency hell... Is > there a simple commandline way to get get a seequence from NCBI and keep a > local copy of NCBI? > > -John > _______________________________________________ > Bioclusters maillist - Bioclusters@bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters