Hello, I am presently doing research in this field, but I do not have any working version of a parallel fragment assembler yet. But look for PCAP. It is made by the same author of CAP3, it should work well on your cluster. Charles > Hi Octavio: > > Have a look at SPS Phrap Suite at > http://www.geospiza.com/tools/sps-phrap.htm . > > Joe > > Octavio Martínez de la Vega wrote: > >>Hi, >> >>We are a genomic research center in México and we will be initiating the >>shotgun sequence of a large genome. Currently we do our bioinformatics >>in a 32 processor cluster, but we assemble (for example ESTs sequences) >>using Phrap and/or CAP3. >>The question is, >>Can I parallelize the assembling of a shotgun sequencing project to use >>the power of a cluster? >> >>Thanks in advance, >> >>Octavio. >> >>------------------------------------ >>Octavio Martínez de la Vega >>Profesor Titular >>omartine@ira.cinvestav.mx >> >> > > > -- > Joseph Landman, Ph.D > Scalable Informatics LLC, > email: landman@scalableinformatics.com > web : http://www.scalableinformatics.com > phone: +1 734 612 4615 > > _______________________________________________ > Bioclusters maillist - Bioclusters@bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters >