Doug Shubert wrote: > Hello Joe, > Getting a Module error. > > [root@opteron bbsv3rc1]# bbsrun --help > Can't locate Object/MultiType.pm in ....... > > Was this Module compiled with bbs3? Hi Doug: Updated tarball fixed this. This module is a dependancy of XML::Smart, and was not caught on my initial pass. New tarball has it. Joe > > Doug > > Joe Landman wrote: > >> Folks: >> >> Much delayed as version 2 went through many rewrites, and we did not >> release early or often. This will be corrected. >> >> http://scalableinformatics.com/BBS/ >> >> and >> >> http://bioinformatics.org/bbs >> >> (they are identical) >> >> Much is new in version 3. >> >> 1) You no longer need to modify program source >> to setup your benchmark. A simple XML input file will do. >> 2) A number of examples are included. We need to document the >> format better, though if you read the format, you will see that it >> really isn't complex (this is what took so long >> oddly enough) >> >> 3) A bbsv1.xml input deck that replicates the original benchmarks from >> last year is included. >> >> 4) New baseline example tests have been created using HMMer, multiple >> BLAST runs, and others. Further baseline tests will be added (and >> suggestions are always welcome). We are looking at a number of codes >> including ClustalW, and various chemistry and proteomics codes. >> >> 5) Output in multiple formats: plain text, csv (comma separated values), >> and XML. >> >> 6) A dryrun option. Does everything but the final execution. Uses a >> random sleep rather than a run. >> Much more code, some of it hinting at things to come. Quite scalable: >> we ran 100 simultaneous tests on a laptop (learning some surprising >> things about DBM and performance loss in the process). Documentation >> has been created at least in the form of man pages. More documentation >> should be available soon, with details of the formats, configuration, >> and so forth >> >> The code is heavily commented. It is GPLed for GPL >> projects/products. For commercial products which need to be non-GPL >> and supported efforts, >> please contact us. >> >> Please give it a spin, and send us a note as to how you found it, what >> else you might like on it, and what tests you would like to see. If you >> want to contribute an idea for a test, or even better, a test, please >> send a note. If you want to help out on coding, please send a note as >> well. >> >> Thanks! >> >> >> > > _______________________________________________ > Bioclusters maillist - Bioclusters@bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters -- Joseph Landman, Ph.D Scalable Informatics LLC, email: landman@scalableinformatics.com web : http://scalableinformatics.com phone: +1 734 612 4615