PISE does exactly what you are thinking about :) http://www.pasteur.fr/recherche/unites/sis/Pise/ Regards, Chris Michael Gutteridge wrote: > Hi all... > > Hopefully this isn't too far off the charter... my apologies if it is, > but this seems to be a good community for this question. > > One of the services I'd like to be able to provide to our users is a > web-based front end to many of the different applications (blast, > clustal*, etc. running on our Torque/Maui cluster) to allow greater > access to those in the community that are intimidated by the Unix > shell. I'm thinking of a web page that allows a user to log in, choose > an application, and fill in a form (containing arguments, options, and > filenames) to have a job run on the cluster. > > On a one-by-one basis, this isn't a huge deal, but it got me to thinking > about generalizing the problem. > > What I think would be Really Cool (tm) is to have a web-based > application that would read a configuration file that "knows" how the > underlying application functions, present various form elements as > appropriate for the options & arguments of the underlying application, > then handle wrapping in a qsub to the cluster. > > So, for application "foo" taking options "bar" and "baz <filename>" > you'd write something that had information about those options: > > <application> > <name>foo</name> > <description>Some application</description> > <option name=bar required=no> > <helptext>Set the bar option</helptext> > </option> > <option name=baz required=no> > <helptext>Use filename for baz option</helptext> > </value=filepath> > <depends>bar</depends> > </option> > </application> > > ( Yeah- really poor approximation of XML there, but hopefully that gives > the general gist. Wouldn't need to be XML, either, just seemed apropos) > > Anyway, the web-application reads that and generates a page with a > checkbox for the "bar" option, a checkbox and text-input box for the > "baz" option, etc. So the web-application does some input validation > before the commands are generated. > > Any suggestions here? Anyone used or seen something like this? Even > some google search words would be helpful (haven't found the combination > of words that return anything useful so far). > > Thanks much! > > Michael > > Michael Gutteridge Fred Hutchinson Cancer Research Ctr. > System Administrator mgutteri@fhcrc.org > > > _______________________________________________ > Bioclusters maillist - Bioclusters@bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters