[Bioclusters] re: how to run mpiblast

[kenix y]

>You will need to create one where you run mpiblast, and in your home 
>directory.
Meaning that I need to create .ncbirc in /root, is that right?

[NCBI]
Data=../data
[BLAST]
BLASTDB=../db

Er, I'm not too sure where the weight matrices are, any way I can find out?

>Then edit the BLASTDB=../db line to point to the database (ecoli.nt in your 
>case).
As for ecoli.nt, I've just moved it to /tmp/blast
So the line should be
[BLAST]
BLASTDB=/tmp/blast/ecoli.nt?
>You will need a copy of this in you home directory and in the directory you 
>run the mpiblast code.
As for the directory to run my mpiblast code, it can be anywhere? Or is 
there a specific location?

Thanks for all your help

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