[Bioclusters] re: how to run mpiblast

[Glen Otero]

On Jul 14, 2004, at 10:51 PM, Joe Landman wrote:

> On Thu, 2004-07-15 at 01:45, kenix y wrote:
>> Regarding .ncbirc, where can I find it?
>> As I can't seems to find it.
>
> You will need to create one where you run mpiblast, and in your home
> directory.
>
> Here is an example:
>
>
> [NCBI]
> Data=../data
> [BLAST]
> BLASTDB=../db
>
>
> edit the Data=../data line to point to the weight matrices.  Glen, if
> you are listening, are these already in biobrew?

,ncbirc is not set up in BioBrew, so you need to create that file. Here 
is how I typically set it up:

[glen@frontend-0 glen]$ more .ncbirc
[NCBI]
Data=/opt/BioBrew/NCBI/6.1.0/data

>
> Then edit the BLASTDB=../db line to point to the database (ecoli.nt in
> your case).
>
> You will need a copy of this in you home directory and in the directory
> you run the mpiblast code.
>
> Joe
>
> ps:  signing off for the night, will answer as I can in the morning.
>
>>
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> -- 
> Joseph Landman, Ph.D
> Scalable Informatics LLC,
> email: landman@scalableinformatics.com
> web  : http://scalableinformatics.com
> phone: +1 734 612 4615
>
> _______________________________________________
> Bioclusters maillist  -  Bioclusters@bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/bioclusters
>
>
Glen Otero, Ph.D.
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