[Bioclusters] GCG in a 64bit environment

[Jeremy Mann]

Joe Landman said:
> Hi Jeremy:
>
>    Do you have the 32 bit compatibility libraries installed?  For the
> binaries in question, what does

jeremy at bcf:~> rpm -qa |grep glibc
glibc-info-2.3.3-63
glibc-devel-32bit-9.1-200404070910
glibc-i18ndata-2.3.3-63
glibc-locale-2.3.3-63
glibc-locale-32bit-9.1-200405060026
glibc-devel-2.3.3-63
glibc-2.3.3-63
glibc-32bit-9.1-200404070912

32bit glibc is installed.

> 	ldd /usr/users/gcg/linuxbin/gcgbin/execute/mapplot
>
> report?  There should be nothing with an "unknown" library entry there.
>   Also, what do
>
> 	file /usr/users/gcg/linuxbin/gcgbin/execute/mapplot

jeremy at bcf:/usr/users/gcg/linuxbin/gcgbin/execute> ldd ./mapplot
        linux-gate.so.1 =>  (0xffffe000)
        libgenshare.so =>
/usr/users/gcg/linuxbin/gcgbin/oblib/libgenshare.so (0x5556d000)
        libdbapi.so => /usr/users/gcg/linuxbin/gcgbin/oblib/libdbapi.so
(0x55729000)
        libncurses.so.5 => /lib/libncurses.so.5 (0x55751000)
        libm.so.6 => /lib/tls/libm.so.6 (0x55796000)
        libc.so.6 => /lib/tls/libc.so.6 (0x557b8000)
        libnsl.so.1 => /lib/libnsl.so.1 (0x558cd000)
        /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x55555000)

> and
>
> 	file /usr/users/gcg/linuxbin/gcgbin/oblib/libgenshare.so

jeremy at bcf:/usr/users/gcg/linuxbin/gcgbin/oblib> ldd ./libgenshare.so
        linux-gate.so.1 =>  (0xffffe000)
        libdbapi.so => libdbapi.so (0x55712000)
        libnsl.so.1 => /lib/libnsl.so.1 (0x5573a000)
        libm.so.6 => /lib/tls/libm.so.6 (0x5574f000)
        libc.so.6 => /lib/tls/libc.so.6 (0x55771000)
        /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x56555000)

It seems to be finding the 32bit glibc since the 64bit version is located
in /lib64.

Any other ideas Joe?



-- 
Jeremy Mann
jeremy at biochem.uthscsa.edu

University of Texas Health Science Center
Bioinformatics Core Facility
http://www.bioinformatics.uthscsa.edu
Phone: (210) 567-2672