[Bioclusters] Sequest Cluster problems

[Anne-Marie Hesse]

Hi,

We have some problems while running Sequest Cluster.  Our cluster is configured as follows:

Master Node:
  Dell Precision 2670, with 2 Xeon 2.4GHz CPUs and 2 gb of RAM
  Microsoft Windows 2003, with Service Pack 1

Slave Nodes 1 to 8:
  Dell Precision 2670, with 2 Xeon 2.4GHz CPUs and 2 gb of RAM
  Linux Fedora Core 4


We are using BioWorks version 3.2 SR1.


The first problem we have is when we start the PVM (by clicking "Start PVM" in the Cluster Manager), we always get the following error for Node 2, even if "Cleanup Nodes" has been clicked prior to starting PVM:

"Error connecting to the stderr server port!error in receive on socket: Socket shutdown by remote." three times the same line

When starting PVM, node2, node6 and node 7 are not started and the message states we started only 6 hosts.

Here is the pvml.proteomics file contents: (joel2 is the name of the master)

[t80040000] JOEL2 (192.168.66.250:1073) WIN32 3.4.3
[t80040000] ready Wed May 24 11:59:36 2006
[t80040000] startack() host node2 expected version, got ""
[t80040000] startack() host node4 expected version, got ""
[t80040000] startack() host node7 expected version, got ""
[t80040000] [t80001] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t80002] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t100001] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t100002] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t180001] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t180002] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t1c0001] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t1c0002] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t240001] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] [t240002] /usr/share/pvm3/bin/LINUXI386/sequest27_slave: error
while loading shared libraries: libstdc++.so.5: cannot open shared object
file: No such file or directory
[t80040000] loclinput() read: 10054
[t80040000] loclinput() marking t40003 dead

Do you have any suggestion ?
Thank you in advance
sincerely

Anne-Marie HESSE

-- 

Anne-Marie HESSE
Laboratoire de Neurobiologie et Diversité Cellulaire UMR 7637
ESPCI
10 rue Vauquelin
75005 Paris
FRANCE