[Genquire-users] problem viewing contigs

[David Block]

Hi Danny!  Brave man!

Okay, there's one step left.  You've got to fill the tiling path table 
with abs_start values.  This is kind of tricky, but I've done it, so you 
should be able to as well.
There is a script in Genquire/Admin called create_tilingpath.pl.  Take a 
look at it, change the database name and IP address of your server, and 
try it out.  Let me know what happens.  It should work, I left it in 
there for a reason, and it's somewhat documented, but you know what they 
say about recursion:

If you want to understand recursion,
	first you must understand recursion.

So it gets a little hairy in there all of a sudden.

Hope this helps!

Dave

On Thursday, January 3, 2002, at 11:58  AM, Danny Yoo wrote:

> Hi everyone,
>
>
> I'm trying to see if I've installed Genquire properly.  After using the
> bulk_parse_contigs.pl file on the arabidopsis XML files, I now see the 5
> chromosomes in a window titled "thale cress".
>
> The contigs appear to be loaded, as mousing over any contig displays a
> name under the GenquireII status bar.  However, double clicking on any
> contig raises exceptions:
>
> ###
> DBD::mysql::st execute failed: Column 'start' cannot be null at
> GQ/Server/DB/Context.pm line 584.
> GQ::Server::DB::Context::_look_lock at GQ/Server/DB/Context.pm line 584
> GQ::Server::DB::Context::lock at GQ/Server/DB/Context.pm line 558
> GQ::Client::QueryScreen::createSeqCanvas at GQ/Client/QueryScreen.pm 
> line
> 965
> GQ::Client::QueryScreen::openMainWindows at GQ/Client/QueryScreen.pm 
> line
> 875
> GQ::Client::QueryScreen::__ANON__ at GQ/Client/QueryScreen.pm line 839
> (command bound to event)
> ###
>
>
> Is this supposed to happen?
>
>
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>
>
--
David Block          (858)812-1513
Bioinformatics        http://www.gnf.org
dblock@gnf.org        Just ridin' the Coaster...