[Genquire-users] problem viewing contigs

[Danny Yoo]

On Thu, 3 Jan 2002, David Block wrote:

> Hi Danny!  Brave man!
>
> Okay, there's one step left.  You've got to fill the tiling path table
> with abs_start values.  This is kind of tricky, but I've done it, so you
> should be able to as well.
> There is a script in Genquire/Admin called create_tilingpath.pl.  Take a
> look at it, change the database name and IP address of your server, and
> try it out.  Let me know what happens.  It should work, I left it in
> there for a reason, and it's somewhat documented, but you know what they
> say about recursion:
>
> If you want to understand recursion,
> 	first you must understand recursion.
>
> So it gets a little hairy in there all of a sudden.

I've been fiddling with create_tilingpath.pl to make it nicer for other
people.  In the process, I've run into a small problem.  Take a look:

###
[during create_tiling.pl run...]

Choose the id and version of the organism you would like to fix up:
latin		common		id		version
Arabidopsis thaliana	thale cress	1	1
1
1
Which Chromosome? 1
DBI::db=HASH(0x8226a90)->disconnect invalidates 3 active statement handles
(either destroy statement handles or call finish on them before
disconnecting) at Admin/create_tilingpath.pl line 66, <STDIN> line 8.
###

According to the DBI documentation, this is just a warning.  Still, I'm
feeling a little nervous about it, so I've updated createtiling.pl to
undefine these appropriately.  I've committed the changes to CVS; can you
take a look and see if it looks ok with you?