[Genquire-users] problem viewing contigs

[David Block]

My bad.  Thanks, Danny.  Yeah, it's just a warning, not a real problem.  
But it's good style to clean up after oneself, and I didn't.

Comes from making statement handles into package globals, then not 
finish-ing them.
I'll try not to do it again.

So, does it work?

-Dave

On Thursday, January 3, 2002, at 04:32  PM, Danny Yoo wrote:

> On Thu, 3 Jan 2002, David Block wrote:
>
>> Hi Danny!  Brave man!
>>
>> Okay, there's one step left.  You've got to fill the tiling path table
>> with abs_start values.  This is kind of tricky, but I've done it, so 
>> you
>> should be able to as well.
>> There is a script in Genquire/Admin called create_tilingpath.pl.  
>> Take a
>> look at it, change the database name and IP address of your server, and
>> try it out.  Let me know what happens.  It should work, I left it in
>> there for a reason, and it's somewhat documented, but you know what 
>> they
>> say about recursion:
>>
>> If you want to understand recursion,
>> 	first you must understand recursion.
>>
>> So it gets a little hairy in there all of a sudden.
>
> I've been fiddling with create_tilingpath.pl to make it nicer for other
> people.  In the process, I've run into a small problem.  Take a look:
>
> ###
> [during create_tiling.pl run...]
>
> Choose the id and version of the organism you would like to fix up:
> latin		common		id		version
> Arabidopsis thaliana	thale cress	1	1
> 1
> 1
> Which Chromosome? 1
> DBI::db=HASH(0x8226a90)->disconnect invalidates 3 active statement 
> handles
> (either destroy statement handles or call finish on them before
> disconnecting) at Admin/create_tilingpath.pl line 66, <STDIN> line 8.
> ###
>
> According to the DBI documentation, this is just a warning.  Still, I'm
> feeling a little nervous about it, so I've updated createtiling.pl to
> undefine these appropriately.  I've committed the changes to CVS; can 
> you
> take a look and see if it looks ok with you?
>
>
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--
David Block          (858)812-1513
Bioinformatics        http://www.gnf.org
dblock@gnf.org        Just ridin' the Coaster...