[Molvis-list] exporting _good_ h-bonds (was: export Chime h-bonds)

Kevin Karplus karplus at soe.ucsc.edu
Tue Jan 3 09:43:33 EST 2006

Although RASMOL *claims* to use the DSSP algorithm for identifying
Hbonds, it does not seem to use the entire algorithm as it reports
many erroneous H-bonds that DSSP omits on geometric grounds.
Rasmol seems to use only the distance and not the geometry of the hbond.

Kevin Karplus 	karplus at soe.ucsc.edu	http://www.soe.ucsc.edu/~karplus
Professor of Biomolecular Engineering, University of California, Santa Cruz
Undergraduate and Graduate Director, Bioinformatics
(Senior member, IEEE)	(Board of Directors, ISCB)
life member (LAB, Adventure Cycling, American Youth Hostels)
Effective Cycling Instructor #218-ck (lapsed)
Affiliations for identification only.

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