pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit
Class Atom

java.lang.Object
  pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.Atom

public class Atom
extends java.lang.Object

Coordinates for an atom, and read-only methods. Instances are not consciuos about their belonging to a Chain or Aminoacid (up-downwards attitude applied that seems to be enough when we are not dabbling with e.g. visual picking).

Field Summary

private float	x 1st coordinate (0X)
private float	y 2nd coordinate (0Y)
private float	z 3rd coordinate (0Z)

Constructor Summary

Atom(Atom atom)

Atom(float[] Coords)
Creates a new instance of Atom

Atom(float x, float y, float z)

Atom(java.lang.Object o)

Method Summary

float	getCoordX()
float[]	getCoordXYZ()
float	getCoordY()
float	getCoordZ()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

x

private float x

1^st coordinate (0X)

y

private float y

2^nd coordinate (0Y)

z

private float z

3^rd coordinate (0Z)

Constructor Detail

Atom

public Atom(float[] Coords)

Creates a new instance of Atom

Parameters:

Coords - array containing 3 coordinates

Atom

public Atom(java.lang.Object o)

Atom

public Atom(Atom atom)

Atom

public Atom(float x,
            float y,
            float z)

Method Detail

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getCoordX

public float getCoordX()

Returns:

1^st coordinate

getCoordY

public float getCoordY()

Returns:

2^nd coordinate

getCoordZ

public float getCoordZ()

Returns:

3^rd coordinate

getCoordXYZ

public float[] getCoordXYZ()

Returns:

all coordinates