Smith-Waterman
From Bioinformatics.Org Wiki
Software
- JAligner - JAligner is a Java implementation of biological sequence alignment algorithms.
- MPSRCH - MPSRCH (tm) is a suite of Smith-Waterman sequence analysis programs which run under Linux and Tru64 on Intel and Alpha.
- UGENE - Complete implementation of Smith-Waterman algorithm + visual interface and SIMD optimizations