XMLPipeDB

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XMLPipeDB: A Reusable, Open Source Tool Chain for Building Relational Databases from XML Sources

Contents 1 Description 2 Home page 3 Source code 4 Executables 5 Supported platforms 6 Documentation 7 Contact information 8 See also

Description

XMLPipeDB is an open source suite of Java-based tools for automatically building relational databases from an XML schema (XSD). XMLPipeDB provides functionality for managing, querying, importing, and exporting information to and from XML data with minimum manual processing of the data. While its applicability is fairly general, the original motivation for XMLPipeDB was to create a solution for the management of biological data from different sources that are used to create Gene Databases for GenMAPP (Gene Map Annotator and Pathway Profiler), software for viewing and analyzing DNA microarray and other genomic and proteomic data on biological pathways.

Home page

• http://xmlpipedb.cs.lmu.edu/index.shtml

Source code

• https://github.com/lmu-bioinformatics/xmlpipedb

Executables

• See the XMLPipeDB Releases page

Supported platforms

• XMLPipeDB is written in java and is platform-independent.
• GenMAPP-compatible Gene Database exported with GenMAPP Builder are only compatible with the Windows platform.

Documentation

• Documentation page
• Wiki

Contact information

• Contact page

See also

• Software