YASS

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Description

YASS is a genomic alignment search tool that uses transitions constrained spaced seeds to achieve high sensitivity on the nucleic sequences being compared. The web interface provides a dot-plot browser to explore the detected similarities.

Dot-plot browser example
Dot-plot browser example.

Home page

http://bioinfo.lifl.fr/yass/

Source code

http://bioinfo.lifl.fr/yass/download.php

Executables

http://bioinfo.lifl.fr/yass/files/yass-current/

Supported platforms

Linux, Windows, Mac OS X

Documentation

http://bioinfo.lifl.fr/yass/help.php

Contact information

laurent.noe@univ-lille1.fr

See also

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